Command:
Rscript compare_gcat_outputs.R ./GCAT2/Media_Background.txt ./GCAT3/Media_Background.txt Media_Background

Summary: 

   Mode    TRUE    NA's 
logical      96       0 
[1] TRUE TRUE TRUE TRUE TRUE TRUE


GCAT2: 

  row                       plate well media strain         model spec.growth
1   1 YPDAFEXglucoseTests_2-25-10  A01  None  Empty <NA>: skipped          NA
2   2 YPDAFEXglucoseTests_2-25-10  B01  None  Empty <NA>: skipped          NA
3   3 YPDAFEXglucoseTests_2-25-10  C01  None  Empty <NA>: skipped          NA
4   4 YPDAFEXglucoseTests_2-25-10  D01  None  Empty <NA>: skipped          NA
5   5 YPDAFEXglucoseTests_2-25-10  E01  None  Empty <NA>: skipped          NA
6   6 YPDAFEXglucoseTests_2-25-10  F01  None  Empty <NA>: skipped          NA
  tot.growth lag.time inoc.OD good.fit empty asymp tank reach other
1         NA       NA      NA       NA    E      -    -    NA    NA
2         NA       NA      NA       NA    E      -    -    NA    NA
3         NA       NA      NA       NA    E      -    -    NA    NA
4         NA       NA      NA       NA    E      -    -    NA    NA
5         NA       NA      NA       NA    E      -    -    NA    NA
6         NA       NA      NA       NA    E      -    -    NA    NA
                                                   pdf.file page.no
1 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       2
2 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       3
3 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       4
4 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       5
5 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       6
6 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.49.pdf       7
  Destination.plate.name Well.ID Plate.source Well.Source
1   Control strain plate   Empty        Empty       Empty
2   Control strain plate   Empty        Empty       Empty
3   Control strain plate   Empty        Empty       Empty
4   Control strain plate   Empty        Empty       Empty
5   Control strain plate   Empty        Empty       Empty
6   Control strain plate   Empty        Empty       Empty


GCAT3: 

  row                       plate well media strain         model spec.growth
1   1 YPDAFEXglucoseTests_2-25-10  A01  None  Empty <NA>: skipped          NA
2   2 YPDAFEXglucoseTests_2-25-10  B01  None  Empty <NA>: skipped          NA
3   3 YPDAFEXglucoseTests_2-25-10  C01  None  Empty <NA>: skipped          NA
4   4 YPDAFEXglucoseTests_2-25-10  D01  None  Empty <NA>: skipped          NA
5   5 YPDAFEXglucoseTests_2-25-10  E01  None  Empty <NA>: skipped          NA
6   6 YPDAFEXglucoseTests_2-25-10  F01  None  Empty <NA>: skipped          NA
  tot.growth lag.time inoc.OD good.fit empty asymp tank reach other
1         NA       NA      NA       NA    E      -    -    NA    NA
2         NA       NA      NA       NA    E      -    -    NA    NA
3         NA       NA      NA       NA    E      -    -    NA    NA
4         NA       NA      NA       NA    E      -    -    NA    NA
5         NA       NA      NA       NA    E      -    -    NA    NA
6         NA       NA      NA       NA    E      -    -    NA    NA
                                                   pdf.file page.no
1 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       2
2 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       3
3 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       4
4 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       5
5 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       6
6 YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf       7
  Destination.plate.name Well.ID Plate.source Well.Source Media.Definition
1   Control strain plate   Empty        Empty       Empty             None
2   Control strain plate   Empty        Empty       Empty             None
3   Control strain plate   Empty        Empty       Empty             None
4   Control strain plate   Empty        Empty       Empty             None
5   Control strain plate   Empty        Empty       Empty             None
6   Control strain plate   Empty        Empty       Empty             None


Specific Growth Comparison Summary: 

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
      1       1       1       1       1       1      50 


Total Growth Comparison Summary: 

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
      1       1       1       1       1       1      50 


Lag Time Comparison Summary: 

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
      1       1       1       1       1       1      50 
null device 
          1 
 [1] row                    plate                  well                  
 [4] media                  strain                 model                 
 [7] spec.growth            tot.growth             lag.time              
[10] inoc.OD                good.fit               empty                 
[13] asymp                  tank                   reach                 
[16] other                  pdf.file               page.no               
[19] Destination.plate.name Well.ID                Plate.source          
[22] Well.Source           
<0 rows> (or 0-length row.names)
 [1] row                    plate                  well                  
 [4] media                  strain                 model                 
 [7] spec.growth            tot.growth             lag.time              
[10] inoc.OD                good.fit               empty                 
[13] asymp                  tank                   reach                 
[16] other                  pdf.file               page.no               
[19] Destination.plate.name Well.ID                Plate.source          
[22] Well.Source            Media.Definition      
<0 rows> (or 0-length row.names)
