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2015-GCAT/Testing/GCAT_Automated_Test_Script/GCAT3/Inoculation.txt
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GCAT5.0 released
2015-04-10 15:12:45 -05:00
"row" "plate" "well" "media" "strain" "model" "spec.growth" "tot.growth" "lag.time" "inoc.OD" "good.fit" "empty" "asymp" "tank" "reach" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "logistic 4-par." 0.00513390947239015 0.0876620001483475 0.000551696237099386 0.110874812224549 2.59465563414583 "I " "-" "-" 92.6741690962163 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards 5-par." 0.0460029361983442 0.240392472194083 2.23932295697808 0.0761318166887226 2.23914120606195 "I " "-" "-" 99.9998792920065 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "richards 5-par." 0.0731423187209926 0.432756582200227 2.94212753267929 0.0918532887250707 2.536051033281 "I " "-" "-" 99.9999952623947 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards 5-par." 0.0874988417362888 0.677479207265783 3.24633816769258 0.0800120483977169 2.87924387138478 "I " "-" "-" 99.9997657328472 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "logistic 4-par." 0.0833321479006846 0.847046661111158 2.77452557039409 0.0752193280284603 2.65845234206059 "I " "-" "-" 99.9918661852256 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "logistic 4-par." 0.0589669239899499 1.11882517761774 1.20640826390575 0.0520133170774622 1.79342170973749 "I " "L" "-" 98.6708254147882 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "logistic 4-par." 0.0459986845139891 0.254831348162179 1.58986879723202 0.112101681081809 1.70864325519431 "I " "-" "-" 99.9999955467498 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "logistic 4-par." 0.0945868089752667 0.425786653122546 2.58713136878942 0.130435146775932 2.46359052165421 "I " "-" "-" 99.9999999852335 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards 5-par." 0.121127547817384 0.685559786610674 2.97587534293576 0.1075037413168 2.89947354509395 "I " "-" "-" 99.9999999800904 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards 5-par." 0.129882547594034 1.04160860310247 2.77302797649945 0.124135599690527 2.75950289629815 "I " "-" "-" 99.9999893489067 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards 5-par." 0.120898412251709 1.32901254481953 2.55988604768709 0.128599154705507 2.86661364643987 "I " "-" "-" 99.9926206656861 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "logistic 4-par." 0.0493379998716343 0.254045397275896 0.523551303454949 0.0888407216209763 1.54716159908116 "I " "-" "-" 99.999996774836 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic 4-par." 0.0931934856727062 0.410238463163683 1.5559350402868 0.0929949311576475 2.39970752160387 "I " "-" "-" 99.9999999909852 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards 5-par." 0.124582742678508 0.661996390783556 2.01051598351255 0.0941849078026622 3.20379613427986 "I " "-" "-" 99.9999999995799 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards 5-par." 0.127931259194577 0.983986521455829 1.92761351717956 0.0938101603743178 2.98526874472308 "I " "L" "-" 99.9999999792319 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "richards 5-par." 0.115525592792629 1.29381927826542 1.74141731218751 0.0890243231205414 2.81287527921917 "I " "L" "-" 99.9999132687566 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "logistic 4-par." 0.0459359326623486 0.248154224199646 0.561170567204033 0.0640432006076648 1.37098828428177 "I " "-" "-" 99.999987765412 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "richards 5-par." 0.0944346858619649 0.470200890606434 1.71183574726233 0.0646296482425968 2.23793506472523 "I " "-" "-" 99.9999948776095 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "richards 5-par." 0.121520620892205 0.708619340533668 1.9245099862059 0.0814089778419187 2.69846627998123 "I " "-" "-" 99.999997890164 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "richards 5-par." 0.128733155060522 0.981131957422723 1.8897638207079 0.0912605323267595 2.90166520842437 "I " "-" "-" 99.9999883919601 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "richards 5-par." 0.122721595892799 1.3094112138332 1.8815491534903 0.0757435729961564 3.02277302645685 "I " "L" "-" 99.9995972781622 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "richards 5-par." 0.0831016694707274 1.26159681822536 9.46105867276385 -0.0156072095149274 2.2176336607405 "E*" "L" "-" 97.6888291753059 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards 5-par." 0.0913331265842828 0.977676293223671 3.74285300700227 0.0585493648561697 3.41803212615394 "I " "-" "-" 99.9967476790949 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards 5-par." 0.0901758840515798 1.02343733695468 3.7585494976221 0.0564421526774237 3.35821455308179 "I " "-" "-" 99.9932921305762 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards 5-par." 0.0876534489375277 1.05107784214595 4.08053328986319 0.0505529065684702 3.43101493489121 "I " "-" "-" 99.9881389964051 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards 5-par." 0.0852505870016418 1.09523234209277 4.2590088920043 0.0546791531091333 3.3224018102746 "I " "-" "-" 99.9643198816725 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards 5-par." 0.0834062493896505 1.16156601844817 4.17519830688 0.0506329107469832 3.24662867008 "I " "-" "-" 99.8770810687182 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards 5-par." 0.0746869173042796 1.29883332508854 4.26111988760969 0.0555468732725124 3.36340266867229 "I " "-" "-" 98.4357653421947 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards 5-par." 0.114235639585196 1.11603265279451 2.80462732513778 0.106026173457393 3.07479264063223 "I " "-" "-" 99.9998418759963 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards 5-par." 0.114214452912468 1.14545395160069 3.03642647181899 0.0901903141548646 3.13967373959077 "I " "-" "-" 99.9996775720213 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards 5-par." 0.11356609836573 1.17951259888145 2.99921572692866 0.0854138714541255 3.20643947548211 "I " "-" "-" 99.9993801531958 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards 5-par." 0.112827039764747 1.23081376697016 2.97207411510676 0.090741698149845 3.1895693830433 "I " "-" "-" 99.9983882461922 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards 5-par." 0.110948156058339 1.28413133026796 3.09434741751019 0.0853800430755536 3.20897314216817 "I " "-" "-" 99.9945939442068 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards 5-par." 0.104909957747906 1.37957293880569 3.37657406597065 0.0857328798243138 3.54895808838256 "I " "-" "-" 99.9340923347588 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards 5-par." 0.12461961390891 1.02126553518662 2.4305352177311 0.0832928033695586 3.19828565863893 "I " "-" "-" 99.9999984996182 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards 5-par." 0.123242474045102 1.07196388949718 2.44085995606895 0.0747514589944707 3.30084510513645 "I " "-" "-" 99.9999944199419 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards 5-par." 0.12090087889886 1.10115777984898 2.35585985916424 0.0719961174673402 3.29576923040073 "I " "L" "-" 99.9999896268808 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards 5-par." 0.119451757970973 1.15953479542773 2.3066400904183 0.0715521817197322 3.20509498580791 "I " "L" "-" 99.9999599907486 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards 5-par." 0.117046866658425 1.23026145665052 2.44407044557878 0.0655027600473694 3.14018976861125 "I " "L" "-" 99.9995689634333 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards 5-par." 0.108331393150974 1.33973156155552 2.51097570573708 0.0649023468973968 3.23212721890241 "I " "-" "-" 99.9822483056319 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards 5-par." 0.121839335523261 1.03094115561518 2.20149868335828 0.0716378203446439 2.99659166289555 "I " "-" "-" 99.9998735461218 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards 5-par." 0.123130425236 1.06412474728157 2.46906361902119 0.0564520573406488 3.19928587493649 "I " "-" "-" 99.999891983369 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards 5-par." 0.120973125758535 1.08554405396271 2.46825462758035 0.056549534178326 3.33630531768612 "I " "-" "-" 99.9998814536437 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "richards 5-par." 0.120740949535359 1.15263316370924 2.5442959513883 0.0522642960780029 3.36496106313701 "I " "-" "-" 99.9996094172831 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "richards 5-par." 0.121802165325221 1.22599703168728 2.5422560684683 0.056307375634215 3.47334970863554 "I " "-" "-" 99.9989009038885 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards 5-par." 0.11290413623126 1.340836387636 2.56045685725438 0.0581661740243069 3.53967163281617 "I " "-" "-" 99.9786442972454 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "logistic 4-par." 0.097251500241612 1.24804582503984 14.6755074922153 -0.00366567404981055 2.38008868734244 "E*" "L/U" "-" 87.1867004610056 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.54.31.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - spec.growth: (Specific growth rate) The largest exponential growth rate achieved by the culture in the course of the experiment
# - tot.growth: (Total extrapolated growth) The estimated growth plateau from the fitted model in optical density units. May be higher than the actual highest OD reached.
# - lag.time: (Lag time) The exponential trend from <spec.growth> is extrapolated to the baseline OD at inoculation and subtracted from the time at inoculation to yield lag time.
# - inoc.OD: (OD at inoculation) The adjusted optical density at the user-specified starting timepoint.
# - good.fit: (Goodness of fit) A metric based on root mean square deviations (RMSD).
# - higher values ( > 3.0) indicate a very good fit while lower values (< 2.0) indicate generally unacceptable fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - reach: (Final growth percentage): The percentage of <tot.growth> reached by the culture in the course of the experiment.
# - other: Other information includes output from jump detection algorithm and additional columns from the Plate Layout.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 0.01
# request sent: 2013-11-26 11:54:31
# completed: 2013-11-26 11:54:41
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: First timepoint in well
# - Index of inoculation timepoint 3
# - Minimum growth threshold: 0.05
# - Removed points:
# - Jump detection: FALSE
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