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2015-GCAT/Testing/GCAT_Automated_Test_Script/GCAT3/Media_Background1.txt
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GCAT5.0 released
2015-04-10 15:12:45 -05:00
"row" "plate" "well" "media" "strain" "model" "spec.growth" "tot.growth" "lag.time" "inoc.OD" "good.fit" "empty" "asymp" "tank" "reach" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards 5-par." 0.0434503343000251 0.25355485467526 2.02165330333884 0.0617033863833638 1.64185698237008 "I " "-" "-" 99.9999736403217 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "richards 5-par." 0.0710461374870435 0.446283240058387 2.88921431893203 0.078039465273223 1.94354072341034 "I " "-" "-" 99.9999992879621 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards 5-par." 0.0860880819729473 0.688375845522998 3.26587795985316 0.0682375379828597 2.36976256861628 "I " "-" "-" 99.9998854906447 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "richards 5-par." 0.0855558286818253 0.848516659814659 2.99428931741607 0.0785443237303707 2.50265696873442 "I " "-" "-" 99.9675537192086 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "logistic 4-par." 0.0590319877346773 1.1313189331006 1.21092069814356 0.0412045752566177 1.7937439452957 "I " "L" "-" 98.6047219117497 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "logistic 4-par." 0.0434892612564025 0.274547126811452 1.17986305219729 0.0930562431741175 1.2462515507653 "I " "-" "-" 99.9999459725148 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "richards 5-par." 0.0897339782050535 0.44725588012243 2.48510022383136 0.111954813319619 1.64728332860566 "I " "-" "-" 99.9999999997907 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards 5-par." 0.118704818394586 0.701739899244777 3.00105743862396 0.0902498862365915 2.16060651373925 "I " "-" "-" 99.9999999982431 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards 5-par." 0.127118789469248 1.06188644325538 2.76198673024551 0.101832988995193 2.2489695413201 "I " "-" "-" 99.9999974728383 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards 5-par." 0.118124578641559 1.3496375733804 2.51164992830229 0.105412244128214 2.36610848171534 "I " "-" "-" 99.9956836427274 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "logistic 4-par." 0.0503915103890343 0.278431850863241 0.230735178823221 0.0667245999493249 1.28125167205809 "I " "-" "-" 99.9999557835925 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic 4-par." 0.0900596817770063 0.426283124892579 1.48660897985453 0.0787853427815937 1.78609838401984 "I " "-" "-" 99.9999999465272 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards 5-par." 0.120932696502068 0.681827053465979 1.98743887548203 0.0750931197769025 2.24806197934911 "I " "-" "-" 99.9999999999806 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards 5-par." 0.124851864857507 1.00554516052416 1.8909730823156 0.0745327038147034 2.45714183902256 "I " "L" "-" 99.9999999978197 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "richards 5-par." 0.113079038402523 1.31499248437073 1.6706153298796 0.0682108949608626 2.54109072078653 "I " "L" "-" 99.9999648186165 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "logistic 4-par." 0.0460541020662134 0.26524158772085 0.357238281642297 0.0484389000123124 1.28333178169019 "I " "L" "-" 99.9999287079269 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "logistic 4-par." 0.0910355508572168 0.484885690164407 1.68228977771903 0.0503454179292044 2.01406534894519 "I " "-" "-" 99.999999075587 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "richards 5-par." 0.1185326268352 0.724942396645568 1.93091588614506 0.0650485245853678 2.28064777433602 "I " "-" "-" 99.9999994051425 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "richards 5-par." 0.125935099476691 1.00060394314497 1.87185854411294 0.0705328954848026 2.43919113300695 "I " "-" "-" 99.9999960758469 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "richards 5-par." 0.12045828658039 1.32681554802285 1.87312970608357 0.0617649897724031 2.72077052437644 "I " "L" "-" 99.9997697224565 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "richards 5-par." 0.083026880473868 1.26274912739788 9.6370199491002 -0.0148648394970353 2.22003323483864 "E*" "L" "-" 97.6179798356663 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards 5-par." 0.0837862465621809 0.985589476660035 3.87077447326577 0.172902084515593 2.936554895572 "I " "-" "-" 99.9976660845596 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards 5-par." 0.0825725388111153 1.03111358478328 3.8935977613249 0.175746057355985 2.95818389639001 "I " "-" "-" 99.9950047689826 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards 5-par." 0.0803990851774492 1.05769131646876 4.23452367239061 0.171669910262409 3.05762797860851 "I " "-" "-" 99.9905797580664 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards 5-par." 0.078260986900903 1.10176517760371 4.41033894653477 0.174661705124986 2.98245532148831 "I " "-" "-" 99.97078656119 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards 5-par." 0.0765359669045422 1.16743187678685 4.33134033283011 0.171774058333315 2.99101843653394 "I " "-" "-" 99.8931141945986 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards 5-par." 0.0684295063358446 1.30296627125276 4.41039755952004 0.177550778776163 3.02126707953049 "I " "-" "-" 98.5429258482389 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards 5-par." 0.103961511845496 1.13335005494973 2.84746894877643 0.216147675837119 2.50607784281402 "I " "-" "-" 99.999934749514 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards 5-par." 0.104426132027787 1.15952947440466 3.1179146181553 0.202220291175903 2.64629880567713 "I " "-" "-" 99.9998358609235 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards 5-par." 0.103564913027715 1.19303695629607 3.08800865283045 0.203591721344972 2.71477777367162 "I " "-" "-" 99.9996508953345 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards 5-par." 0.103109984243399 1.24497138884473 3.04906663958604 0.203623320796393 2.68869096385621 "I " "-" "-" 99.9990405446907 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards 5-par." 0.101328068865228 1.29683436370675 3.18655040766587 0.203111588999557 2.75266670603191 "I " "-" "-" 99.996339173896 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards 5-par." 0.0960414766942334 1.39007056093517 3.47869089975363 0.202353552916657 2.86594136189225 "I " "-" "-" 99.9467189237796 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards 5-par." 0.113180265724915 1.03747916133359 2.49766338810221 0.198495309639666 2.6483170296715 "I " "-" "-" 99.99999950571 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards 5-par." 0.112532945731761 1.08681009274574 2.52119628407453 0.186329225710496 2.77398299574405 "I " "-" "-" 99.9999976342956 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards 5-par." 0.110237121553375 1.11602705298285 2.43678055941639 0.18724754693763 2.81184006554946 "I " "-" "-" 99.9999952725547 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards 5-par." 0.109153261238411 1.17453886329702 2.38442334222443 0.183907793076526 2.80879291485336 "I " "-" "-" 99.9999796529525 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards 5-par." 0.107153820876407 1.24345235940033 2.53842674779367 0.178885414386565 2.84792003349477 "I " "-" "-" 99.9997261996811 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards 5-par." 0.0990827158819113 1.35146254239763 2.60572114613308 0.180195185614621 2.91808898590255 "I " "-" "-" 99.9858735540263 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards 5-par." 0.110458083084921 1.04485579994439 2.27701838325376 0.188114595684521 2.65931477578895 "I " "-" "-" 99.9999271625885 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards 5-par." 0.112540220994811 1.07487901296182 2.58417196441953 0.171301212668114 2.88882458916344 "I " "-" "-" 99.9999309539298 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards 5-par." 0.110640152738962 1.09653685419261 2.58231557868978 0.171664577469133 2.95663771710228 "I " "-" "-" 99.9999237076305 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "richards 5-par." 0.1105967205646 1.16275661096821 2.66983121158 0.168291454109896 3.03987519406164 "I " "-" "-" 99.9997284198838 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "richards 5-par." 0.111561409951938 1.23655979175461 2.66322072814323 0.172114613842357 3.06755684662736 "I " "-" "-" 99.9991978972748 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards 5-par." 0.103366231210924 1.3509354915414 2.67448563817088 0.173610905690015 3.10078735926473 "I " "-" "-" 99.9823958592765 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "logistic 4-par." 0.0898948262289814 1.25317410845682 14.918347724891 0.115247567652615 2.39076788045153 "E*" "U" "-" 86.9727718976639 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.41.59.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - spec.growth: (Specific growth rate) The largest exponential growth rate achieved by the culture in the course of the experiment
# - tot.growth: (Total extrapolated growth) The estimated growth plateau from the fitted model in optical density units. May be higher than the actual highest OD reached.
# - lag.time: (Lag time) The exponential trend from <spec.growth> is extrapolated to the baseline OD at inoculation and subtracted from the time at inoculation to yield lag time.
# - inoc.OD: (OD at inoculation) The adjusted optical density at the user-specified starting timepoint.
# - good.fit: (Goodness of fit) A metric based on root mean square deviations (RMSD).
# - higher values ( > 3.0) indicate a very good fit while lower values (< 2.0) indicate generally unacceptable fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - reach: (Final growth percentage): The percentage of <tot.growth> reached by the culture in the course of the experiment.
# - other: Other information includes output from jump detection algorithm and additional columns from the Plate Layout.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 0.01
# request sent: 2013-11-26 11:41:59
# completed: 2013-11-26 11:42:10
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: 0.093
# - Index of inoculation timepoint 2
# - Minimum growth threshold: 0.05
# - Removed points:
# - Jump detection: FALSE
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