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2015-GCAT/Testing/GCAT_Automated_Test_Script/GCAT3/OD_Transform.txt
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GCAT5.0 released
2015-04-10 15:12:45 -05:00
"row" "plate" "well" "media" "strain" "model" "spec.growth" "tot.growth" "lag.time" "inoc.OD" "good.fit" "empty" "asymp" "tank" "reach" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "logistic 4-par." 0.0051339104025321 0.0886723328566521 0.0010960793606184 0.109864484860788 2.59465563414594 "I " "-" "-" 92.7576349468939 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards 5-par." 0.046002940306046 0.240507240883085 2.41478235175163 0.0760170490729348 2.23914120606312 "I " "-" "-" 99.9998793491392 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "richards 5-par." 0.0731423187284127 0.433505884635671 3.11051947470925 0.0911039861390441 2.53605103328146 "I " "-" "-" 99.9999952705852 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards 5-par." 0.0874988417043893 0.678577289035852 3.41249009999581 0.0789139664707765 2.87924387138496 "I " "-" "-" 99.9997661119774 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "logistic 4-par." 0.0833321480330421 0.84892275974252 2.93134654253266 0.073343229233773 2.65845234206075 "I " "-" "-" 99.991884161003 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "logistic 4-par." 0.0589669239782459 1.12434511662564 1.29496928736621 0.046493377454031 1.79342170973749 "I " "L" "-" 98.6773509965225 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "logistic 4-par." 0.0459986844673101 0.256099056993136 1.74285082231178 0.110833972260523 1.7086432551943 "I " "-" "-" 99.9999955687937 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "logistic 4-par." 0.094586809109001 0.426236311576192 2.76070291990178 0.129985488302977 2.46359052165418 "I " "-" "-" 99.9999999852491 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards 5-par." 0.121127547834438 0.686895206195343 3.14369238195928 0.106168321707794 2.899473545094 "I " "-" "-" 99.9999999801291 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards 5-par." 0.129882547639779 1.04404130073079 2.93412602521094 0.121702902135689 2.75950289629821 "I " "-" "-" 99.9999893737237 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards 5-par." 0.120898411706254 1.33105577737345 2.72267556496827 0.12655592121228 2.86661364644022 "I " "-" "-" 99.9926319946813 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "logistic 4-par." 0.0493379997843534 0.258082503402126 0.626040233021415 0.0848036154923235 1.54716159908115 "I " "-" "-" 99.9999968252864 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic 4-par." 0.093193485656018 0.411823417276531 1.71814140307729 0.0914099770407319 2.39970752160387 "I " "-" "-" 99.9999999910198 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards 5-par." 0.124582742622812 0.665080891230421 2.16563432426164 0.091100407355597 3.20379613427983 "I " "-" "-" 99.9999999995818 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards 5-par." 0.127931246989736 0.990156801382824 2.06117153412082 0.0876398778418972 2.98526874471877 "I " "L" "-" 99.9999999793615 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "richards 5-par." 0.115525592287136 1.30147912807139 1.85809576888812 0.0813644729068572 2.81287527921881 "I " "L" "-" 99.9999137792424 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "logistic 4-par." 0.0459359326345167 0.251845669441832 0.663293098031621 0.0603517553820379 1.37098828428178 "I " "-" "-" 99.9999879447413 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "richards 5-par." 0.094434689949163 0.470902886035373 1.8826288625178 0.0639276535310338 2.23793506472592 "I " "-" "-" 99.9999948852344 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "richards 5-par." 0.121520619472619 0.710378798342107 2.08888813058284 0.0796495197823908 2.69846627998211 "I " "-" "-" 99.9999978953908 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "richards 5-par." 0.128733154739806 0.984997029200378 2.0399797106055 0.0873954601678824 2.90166520842456 "I " "-" "-" 99.9999884375137 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "richards 5-par." 0.122721598738299 1.31537998678672 2.01398893630359 0.0697748020039699 3.02277302646044 "I " "L" "-" 99.9995991051657 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "richards 5-par." 0.0831016695295036 1.26198322710616 9.6341119668272 -0.0159936185251121 2.21763366074044 "E*" "L" "-" 97.6895368192497 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards 5-par." 0.0913331265905349 0.979679343699591 3.89989293822063 0.0565463143969478 3.41803212615394 "I " "-" "-" 99.996754328781 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards 5-par." 0.0901758841312911 1.02553230430999 3.91431464072772 0.054347185302541 3.3582145530818 "I " "-" "-" 99.9933058334686 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards 5-par." 0.087653449479707 1.05312597876003 4.23604747636681 0.0485047709394144 3.43101493489101 "I " "-" "-" 99.9881620605088 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards 5-par." 0.0852505865256928 1.09709212221813 4.4160839430485 0.0528193717230026 3.32240181027237 "I " "-" "-" 99.9643803748374 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards 5-par." 0.0834062493600675 1.16328851193977 4.33330336969409 0.0489104172866142 3.24662867008 "I " "-" "-" 99.8772630755024 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards 5-par." 0.0746869172685951 1.29976805435626 4.42703571454512 0.0546121442553045 3.36340266867229 "I " "-" "-" 98.4368902568205 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards 5-par." 0.11423563936283 1.11928465325468 2.95662866422492 0.10277417292392 3.07479264063237 "I " "-" "-" 99.9998423354262 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards 5-par." 0.114214452831191 1.14837906885588 3.19068068041329 0.0872651968628158 3.13967373959083 "I " "-" "-" 99.9996783933085 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards 5-par." 0.113566098483318 1.18251324712617 3.15261697058665 0.0824132232798602 3.20643947548216 "I " "-" "-" 99.9993817260453 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards 5-par." 0.112827039600267 1.23375586100143 3.12591278868747 0.0877996040474751 3.18956938304341 "I " "-" "-" 99.9983920897484 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards 5-par." 0.110948155806134 1.28676660547704 3.25021471205597 0.0827447676928017 3.20897314216787 "I " "-" "-" 99.9946050160346 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards 5-par." 0.104909957772007 1.38120323294419 3.5400282340856 0.0841025860310471 3.54895808838236 "I " "-" "-" 99.9341701264792 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards 5-par." 0.124619613670634 1.02546123083454 2.57717331265474 0.0790971076805143 3.1982856586391 "I " "-" "-" 99.9999985057572 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards 5-par." 0.123242472307703 1.0763049093573 2.58579779724471 0.0704104383586222 3.30084510513736 "I " "-" "-" 99.9999944424538 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards 5-par." 0.12090087158723 1.10591407490241 2.49685751569192 0.0672398191226693 3.29576923039635 "I " "L" "-" 99.9999896715369 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards 5-par." 0.119451758787832 1.16449508809393 2.44557526327415 0.0665918895911914 3.20509498580801 "I " "L" "-" 99.9999601611542 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards 5-par." 0.117046850703108 1.23459712335416 2.58701197446896 0.0611670849509847 3.14018976860492 "I " "L" "-" 99.9995704795227 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards 5-par." 0.108331393797411 1.34306781528512 2.65978833216588 0.0615660939241569 3.23212721890241 "I " "-" "-" 99.9822923993972 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards 5-par." 0.121839335770884 1.03411101157879 2.35496298854354 0.0684679645246347 2.99659166289529 "I " "-" "-" 99.9998739337277 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards 5-par." 0.123130424753602 1.0671848756261 2.62328252943635 0.0533919287920788 3.19928587493597 "I " "-" "-" 99.9998922931215 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards 5-par." 0.120973126016907 1.08894424184742 2.61938690806177 0.0531493464712776 3.33630531768578 "I " "-" "-" 99.9998818237851 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "richards 5-par." 0.120740948707418 1.1559165803317 2.69619009025558 0.048980878983772 3.36496106313806 "I " "-" "-" 99.9996105268543 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "richards 5-par." 0.121802166262885 1.22916108660807 2.69540468852973 0.0531433213499186 3.47334970863371 "I " "-" "-" 99.99890373284 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards 5-par." 0.112904136028813 1.3434348403126 2.71645828999368 0.0555677209128236 3.53967163281668 "I " "-" "-" 99.9786856044998 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "logistic 4-par." 0.0972515006011796 1.24805373798836 14.8532035505196 -0.00367359356392638 2.38008868734198 "E*" "L/U" "-" 87.1867820927035 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.46.14.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - spec.growth: (Specific growth rate) The largest exponential growth rate achieved by the culture in the course of the experiment
# - tot.growth: (Total extrapolated growth) The estimated growth plateau from the fitted model in optical density units. May be higher than the actual highest OD reached.
# - lag.time: (Lag time) The exponential trend from <spec.growth> is extrapolated to the baseline OD at inoculation and subtracted from the time at inoculation to yield lag time.
# - inoc.OD: (OD at inoculation) The adjusted optical density at the user-specified starting timepoint.
# - good.fit: (Goodness of fit) A metric based on root mean square deviations (RMSD).
# - higher values ( > 3.0) indicate a very good fit while lower values (< 2.0) indicate generally unacceptable fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - reach: (Final growth percentage): The percentage of <tot.growth> reached by the culture in the course of the experiment.
# - other: Other information includes output from jump detection algorithm and additional columns from the Plate Layout.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 0.01
# request sent: 2013-11-26 11:46:14
# completed: 2013-11-26 11:46:27
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: First timepoint in well
# - Index of inoculation timepoint 2
# - Minimum growth threshold: 0.05
# - Removed points:
# - Jump detection: FALSE
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