Updated master to SVN trunk revision 572

R/GCAT/man/transform.ODs.Rd

@@ -1,7 +1,8 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/normalize.and.transform.R
 \name{transform.ODs}
 \alias{transform.ODs}
-\title{Transform.Ods}
+\title{Log-transform OD readings for a single well object}
 \usage{
 \method{transform}{ODs}(input.well, use.log = T, blank.value = NULL,
   start.index = 2, negative.OD.cutoff = 10, constant.added = 1, ...)
@@ -17,6 +18,10 @@ or raw normalized data is returned using the function \code{data.from}.}
 \item{start.index}{which timepoint should be used as the first one after inoculation (defaults to the 2th one)}
 
 \item{negative.OD.cutoff}{if any ODs below the specified blank value are detected before this index timepoint, the entire well is discarded.}
+
+\item{constant.added}{similar to added.constant.}
+
+\item{...}{Additional arguments for this function.}
 }
 \description{
 This function adds a "log.OD" column to the "screen.data" slot of a well object with log-transformed data.