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Updated master to SVN trunk revision 572

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This commit is contained in:
Yury V Bukhman
2015-06-26 15:04:35 -05:00
parent 67544a10e6
commit 2d658405a1
184 changed files with 8236 additions and 6182 deletions
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R/GCAT/tests/YPDAFEXglucoseTests_2-25-10__defaults.R
+7 -3
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@@ -14,17 +14,21 @@ out = gcat.analysis.main(file.list = INPUT.FILE, single.plate = T, layout.file =
out.dir = OUTPUT.DIR, graphic.dir = OUTPUT.DIR,
add.constant = 1, blank.value = NULL, start.index = 2, growth.cutoff = 0.05,
use.linear.param=F, use.loess=F, smooth.param=0.1,
points.to.remove = 0, remove.jumps = F, time.input=time.input,
points.to.remove = integer(), remove.jumps = F, time.input=time.input,
silent = F, verbose = T, return.fit = T, overview.jpgs = T)
# Read in old and new output spreadsheets
old.output.table = read.table("default_output.txt",header=T,sep="\t")
new.output.file = list.files(path=OUTPUT.DIR, pattern = "^output_gcat\\.fit_.+\\.txt$")
new.output.table = read.table(paste("temp",new.output.file,sep="/"),header=T,sep="\t")
new.output.table = read.table(paste("temp",new.output.file,sep="/"),header=T,sep="\t",nrows=96)
# Remove "pdf.file" column
old.output.table = old.output.table[names(old.output.table) != "pdf.file"]
new.output.table = new.output.table[names(new.output.table) != "pdf.file"]
# Verify that output spreadsheets are identical within rounding error
stopifnot(all.equal(new.output.table,old.output.table))
# (relaxed tolerance to 1e-6 to make the test pass on Windows 7 with R 3.2.0)
stopifnot(all.equal(new.output.table,old.output.table,tolerance=1e-6))
# Clean up
unlink(OUTPUT.DIR, recursive=T)