GCAT5.0 released

2015-04-10 15:12:45 -05:00
commit 67544a10e6
257 changed files with 61661 additions and 0 deletions
@@ -0,0 +1,35 @@
+% Generated by roxygen2 (4.0.2): do not edit by hand
+\name{fit.model}
+\alias{fit.model}
+\title{fit.model}
+\usage{
+fit.model(input.well, growth.model, backup.growth.model = NULL,
+  fit.if.no.growth = F, use.linear.param = F, use.loess = F, smooth.param,
+  silent = T)
+}
+\arguments{
+\item{input.well}{The well needed to be fitted with the given model.}
+
+\item{growth.model}{What growth model should be used?}
+
+\item{backup.growth.model}{If \code{gowth.mode} fails, this model will be used.}
+
+\item{fit.if.no.growth}{should the function attempt to fit a well even if there was no growth detected? default is F}
+
+\item{silent}{output back to R console?}
+
+\item{use.linear.param:}{Should an additional linear parameter (c) be used when fitting the data to the model?}
+
+\item{use.loess:}{Should Local Polynomial Regression Fitting (loess function) be used instead of nls?}
+
+\item{smooth.param:}{If loess is used, an optional smoothing parameter. Default is .6}
+}
+\description{
+This function will use the function stored in the "guess" slot of \code{growth.model} to calculate initial guesses
+for growth.model parameters, then it will use the "formula" slot with \code{nls} to fit a non-linear least squares
+\code{growth.model} or Local Polynomial Regression Fitting to the data. Richards model is first fitted.
+If the shape parameter is statisticaly significant then Richards is used. If it is within 2 SE of 1 or Zero than
+a simpler model is preferred. If the Richards fit fails, then Logistic is tried. If it fails, Gompertz is tried.
+Model fit failure is reported if none of the models can sucessfully fit the data
+}
+