GCAT5.0 released

This commit is contained in:
Minh
2015-04-10 15:12:45 -05:00
commit 67544a10e6
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
require File.expand_path('../boot', __FILE__)
#Not using a database for GCAT
#require 'rails/all'
require "action_controller/railtie"
require "action_mailer/railtie"
require "active_resource/railtie"
require "rails/test_unit/railtie"
require "sprockets/railtie"
if defined?(Bundler)
# If you precompile assets before deploying to production, use this line
#Bundler.require *Rails.groups(:assets => %w(development test))
# If you want your assets lazily compiled in production, use this line
Bundler.require(:default, :assets, Rails.env)
end
module Gcat
class Application < Rails::Application
# Settings in config/environments/* take precedence over those specified here.
# Application configuration should go into files in config/initializers
# -- all .rb files in that directory are automatically loaded.
# Custom directories with classes and modules you want to be autoloadable.
# config.autoload_paths += %W(#{config.root}/extras)
# Only load the plugins named here, in the order given (default is alphabetical).
# :all can be used as a placeholder for all plugins not explicitly named.
# config.plugins = [ :exception_notification, :ssl_requirement, :all ]
# Activate observers that should always be running.
# config.active_record.observers = :cacher, :garbage_collector, :forum_observer
# Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.
# Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
# config.time_zone = 'Central Time (US & Canada)'
# The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
# config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
# config.i18n.default_locale = :de
config.i18n.enforce_available_locales = false
# Configure the default encoding used in templates for Ruby 1.9.
config.encoding = "utf-8"
# Configure sensitive parameters which will be filtered from the log file.
config.filter_parameters += [:password]
# Enable the asset pipeline
config.assets.enabled = true
# Version of your assets, change this if you want to expire all your assets
config.assets.version = '1.0'
end
end
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
require 'rubygems'
# Set up gems listed in the Gemfile.
ENV['BUNDLE_GEMFILE'] ||= File.expand_path('../../Gemfile', __FILE__)
require 'bundler/setup' if File.exists?(ENV['BUNDLE_GEMFILE'])
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# SQLite version 3.x
# gem install sqlite3
#
# Ensure the SQLite 3 gem is defined in your Gemfile
# gem 'sqlite3'
development:
adapter: sqlite3
database: db/development.sqlite3
pool: 5
timeout: 5000
# Warning: The database defined as "test" will be erased and
# re-generated from your development database when you run "rake".
# Do not set this db to the same as development or production.
test:
adapter: sqlite3
database: db/test.sqlite3
pool: 5
timeout: 5000
production:
adapter: sqlite3
database: db/production.sqlite3
pool: 5
timeout: 5000
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Load the rails application
require File.expand_path('../application', __FILE__)
# Initialize the rails application
Gcat::Application.initialize!
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
Gcat::Application.configure do
# Settings specified here will take precedence over those in config/application.rb
# In the development environment your application's code is reloaded on
# every request. This slows down response time but is perfect for development
# since you don't have to restart the web server when you make code changes.
config.cache_classes = false
# Log error messages when you accidentally call methods on nil.
config.whiny_nils = true
# Show full error reports and disable caching
config.consider_all_requests_local = true
config.action_controller.perform_caching = false
# Don't care if the mailer can't send
config.action_mailer.raise_delivery_errors = false
# Print deprecation notices to the Rails logger
config.active_support.deprecation = :log
# Only use best-standards-support built into browsers
config.action_dispatch.best_standards_support = :builtin
# Do not compress assets
config.assets.compress = false
# Expands the lines which load the assets
config.assets.debug = true
end
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
Gcat::Application.configure do
# Settings specified here will take precedence over those in config/application.rb
# Code is not reloaded between requests
config.cache_classes = true
# Full error reports are disabled and caching is turned on
config.consider_all_requests_local = false
config.action_controller.perform_caching = true
# Disable Rails's static asset server (Apache or nginx will already do this)
config.serve_static_assets = false
# Compress JavaScripts and CSS
config.assets.compress = true
# Don't fallback to assets pipeline if a precompiled asset is missed
config.assets.compile = true
# Generate digests for assets URLs
config.assets.digest = true
# Defaults to Rails.root.join("public/assets")
# config.assets.manifest = YOUR_PATH
# Specifies the header that your server uses for sending files
# config.action_dispatch.x_sendfile_header = "X-Sendfile" # for apache
# config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for nginx
# Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
# config.force_ssl = true
# See everything in the log (default is :info)
# config.log_level = :debug
# Use a different logger for distributed setups
# config.logger = SyslogLogger.new
# Use a different cache store in production
# config.cache_store = :mem_cache_store
# Enable serving of images, stylesheets, and JavaScripts from an asset server
# config.action_controller.asset_host = "http://assets.example.com"
# Precompile additional assets (application.js, application.css, and all non-JS/CSS are already added)
# config.assets.precompile += %w( search.js )
# Disable delivery errors, bad email addresses will be ignored
# config.action_mailer.raise_delivery_errors = false
# Enable threaded mode
# config.threadsafe!
# Enable locale fallbacks for I18n (makes lookups for any locale fall back to
# the I18n.default_locale when a translation can not be found)
config.i18n.fallbacks = true
# Send deprecation notices to registered listeners
config.active_support.deprecation = :notify
end
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
Gcat::Application.configure do
# Settings specified here will take precedence over those in config/application.rb
# The test environment is used exclusively to run your application's
# test suite. You never need to work with it otherwise. Remember that
# your test database is "scratch space" for the test suite and is wiped
# and recreated between test runs. Don't rely on the data there!
config.cache_classes = true
# Configure static asset server for tests with Cache-Control for performance
config.serve_static_assets = true
config.static_cache_control = "public, max-age=3600"
# Log error messages when you accidentally call methods on nil
config.whiny_nils = true
# Show full error reports and disable caching
config.consider_all_requests_local = true
config.action_controller.perform_caching = false
# Raise exceptions instead of rendering exception templates
config.action_dispatch.show_exceptions = false
# Disable request forgery protection in test environment
config.action_controller.allow_forgery_protection = false
# Tell Action Mailer not to deliver emails to the real world.
# The :test delivery method accumulates sent emails in the
# ActionMailer::Base.deliveries array.
config.action_mailer.delivery_method = :test
# Use SQL instead of Active Record's schema dumper when creating the test database.
# This is necessary if your schema can't be completely dumped by the schema dumper,
# like if you have constraints or database-specific column types
# config.active_record.schema_format = :sql
# Print deprecation notices to the stderr
config.active_support.deprecation = :stderr
# Allow pass debug_assets=true as a query parameter to load pages with unpackaged assets
config.assets.allow_debugging = true
end
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
# You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
# Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
# You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
# Rails.backtrace_cleaner.remove_silencers!
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
# Add new inflection rules using the following format
# (all these examples are active by default):
# ActiveSupport::Inflector.inflections do |inflect|
# inflect.plural /^(ox)$/i, '\1en'
# inflect.singular /^(ox)en/i, '\1'
# inflect.irregular 'person', 'people'
# inflect.uncountable %w( fish sheep )
# end
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
# Add new mime types for use in respond_to blocks:
# Mime::Type.register "text/richtext", :rtf
# Mime::Type.register_alias "text/html", :iphone
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
# Your secret key for verifying the integrity of signed cookies.
# If you change this key, all old signed cookies will become invalid!
# Make sure the secret is at least 30 characters and all random,
# no regular words or you'll be exposed to dictionary attacks.
Gcat::Application.config.secret_token = 'a1ba91ea23f998a7faf1a2c7128510c1e1dbd403d38ef2c7d280401a7e92645a18495e3f8eda0d5e9c67b1613372f0faef0775b4236758cc74650ef5c314d40b'
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
Gcat::Application.config.session_store :cookie_store, key: '_gcat_session'
# Use the database for sessions instead of the cookie-based default,
# which shouldn't be used to store highly confidential information
# (create the session table with "rails generate session_migration")
# Gcat::Application.config.session_store :active_record_store
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
# Be sure to restart your server when you modify this file.
#
# This file contains settings for ActionController::ParamsWrapper which
# is enabled by default.
# Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
ActiveSupport.on_load(:action_controller) do
wrap_parameters format: [:json]
end
# Disable root element in JSON by default.
ActiveSupport.on_load(:active_record) do
self.include_root_in_json = false
end
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# Sample localization file for English. Add more files in this directory for other locales.
# See https://github.com/svenfuchs/rails-i18n/tree/master/rails%2Flocale for starting points.
en:
hello: "Hello world"
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#
# Copyright 2012 The Board of Regents of the University of Wisconsin System.
# Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
# Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
#
# This file is part of GCAT.
#
# GCAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# GCAT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with GCAT. If not, see <http://www.gnu.org/licenses/>.
#
Gcat::Application.routes.draw do
resources :assays
root :to => 'assays#new'
# The priority is based upon order of creation:
# first created -> highest priority.
# Sample of regular route:
# match 'products/:id' => 'catalog#view'
# Keep in mind you can assign values other than :controller and :action
# Sample of named route:
# match 'products/:id/purchase' => 'catalog#purchase', :as => :purchase
# This route can be invoked with purchase_url(:id => product.id)
# Sample resource route (maps HTTP verbs to controller actions automatically):
# resources :products
# Sample resource route with options:
# resources :products do
# member do
# get 'short'
# post 'toggle'
# end
#
# collection do
# get 'sold'
# end
# end
# Sample resource route with sub-resources:
# resources :products do
# resources :comments, :sales
# resource :seller
# end
# Sample resource route with more complex sub-resources
# resources :products do
# resources :comments
# resources :sales do
# get 'recent', :on => :collection
# end
# end
# Sample resource route within a namespace:
# namespace :admin do
# # Directs /admin/products/* to Admin::ProductsController
# # (app/controllers/admin/products_controller.rb)
# resources :products
# end
# You can have the root of your site routed with "root"
# just remember to delete public/index.html.
# root :to => 'welcome#index'
# See how all your routes lay out with "rake routes"
# This is a legacy wild controller route that's not recommended for RESTful applications.
# Note: This route will make all actions in every controller accessible via GET requests.
# match ':controller(/:action(/:id(.:format)))'
end