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GCAT5.0 released

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Minh
2015-04-10 15:12:45 -05:00
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Copyright 2012 The Board of Regents of the University of Wisconsin System.
Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
This file is part of GCAT.
GCAT is free software: you can redistribute it and/or modify
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Copyright 2012 The Board of Regents of the University of Wisconsin System.
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Michael H. Whitney, Nathan DiPiazza, Trey K. Sato and Yury V. Bukhman
This file is part of GCAT.
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Copyright 2012 The Board of Regents of the University of Wisconsin System.
Contributors: Jason Shao, James McCurdy, Enhai Xie, Adam G.W. Halstead,
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This file is part of GCAT.
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"row" "plate" "well" "media" "strain" "model" "lag.time, hrs" "lag.time.SE, hrs" "inflection.time, hrs" "max.spec.growth.rate, log.OD/hr" "max.spec.growth.rate.SE, log.OD/hr" "baseline, log.OD" "baseline.SE, log.OD" "amplitude, log.OD" "amplitude.SE, log.OD" "plateau, log.OD" "inoc.log.OD" "max.log.OD" "projected.growth, log.OD" "achieved.growth, log.OD" "baseline.OD" "amplitude.OD" "plateau.OD" "inoc.OD" "max.OD" "projected.growth.OD" "achieved.growth.OD" "shape.par" "shape.par.SE" "R.squared" "RSS" "empty" "asymp.not.reached" "tank" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "gompertz sigmoid" 0 1.75346931682115 9.008895 0.00387129154161333 0.000169526575673485 0.106012627582768 0.00533332981254499 0.0949774510885174 0.0112054786798504 0.200990078671286 0.112280003029694 0.184252861643961 0.0887100756415918 0.0719728586142672 0.111835916217944 0.0996340592954781 0.222612641821245 0.118826091485523 0.202319805224487 0.103786550335722 0.0834937137389644 NA NA 0.955970181896242 0.00271004795972447 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards sigmoid" 2.40987768343735 0.0533048366613944 4.21845083333333 0.0460029603516824 0.000724536080633502 0.0730406465985917 0.00147448206809288 0.20195449827016 0.00148223339842928 0.274995144868751 0.073266311037202 0.274994924460913 0.201728833831549 0.201728613423711 0.0757742625906743 0.22379232217684 0.316524282953919 0.0760170539793741 0.31652399278168 0.240507228974545 0.240506938802306 0.265875936579388 0.100708043886741 0.997917404710374 0.00135388203716233 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "logistic sigmoid." 3.07823403673893 0.0432348209213164 5.3624375 0.0732442091237218 0.00083385044900585 0.0859165104025432 0.00136428289761777 0.336085729465356 0.00149532007847134 0.4220022398679 0.0889960026247708 0.422002205393214 0.333006237243129 0.333006202768443 0.0897153446116215 0.399458994539777 0.525011940504746 0.0930762868815243 0.52501188793044 0.431935653623222 0.431935601048915 NA NA 0.99892015420286 0.00211931922664724 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards sigmoid" 3.31104934964427 0.0428738829656516 6.24426055555555 0.087498859778052 0.000646229427574331 0.0670789160536515 0.00264084512090784 0.496808437832399 0.00261152544308038 0.56388735388605 0.0759549213884333 0.563886450845895 0.487932432497617 0.487931529457461 0.0693798660836618 0.643467662335959 0.757491228661656 0.0789139371187617 0.75748964157722 0.678577291542894 0.678575704458458 1.22323321021831 0.0913419736269564 0.999523017751576 0.00210815425649153 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "richards sigmoid" 3.16160945641398 0.0130132752242264 5.69610027777778 0.0871403267354909 0.000229646786119097 0.08737718548213 0.000697693868328928 0.569725537718312 0.000706582348719082 0.657102723200442 0.0877050574005534 0.656913955188774 0.569397665799888 0.56920889778822 0.0913082277184576 0.767781795419447 0.92919481815215 0.0916660957048965 0.928830682251893 0.837528722447253 0.837164586546997 0.128377244056841 0.0158490082737876 0.999930578411107 0.000418173571721894 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "gompertz sigmoid" 1.97362812374979 0.160218470960237 6.10126222222222 0.0637129438472813 0.000882845743042059 0.0636642130548074 0.00677504517335327 0.715651375940815 0.00877835119047133 0.779315588995622 0.0726054464623438 0.769574985282588 0.706710142533278 0.696969538820244 0.0657344789473957 1.0455186500407 1.17997975267831 0.0753061873456158 1.15884851638065 1.10467356533269 1.08354232903504 NA NA 0.996368548540555 0.0284187363816137 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "gompertz sigmoid" 0 6.85707287937896 22.1409086111111 0.00240032503165892 0.000622808682835668 0.183471250816661 0.0241038377523601 0.144528358183154 0.243574028025108 0.327999608999814 0.193008393297115 0.240674524494353 0.134991215702699 0.0476661311972385 0.201380426209075 0.155494462222733 0.388188429507373 0.212892973647493 0.27210692827532 0.175295455859879 0.0592139546278265 NA NA 0.790451631963756 0.00713078905920281 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "gompertz sigmoid" 1.9906115468579 0.0691975318131243 3.47962611111111 0.0490374116952237 0.00113344212179788 0.113611335614137 0.00175358527026848 0.199753898562767 0.00189317967250483 0.313365234176905 0.113618321003616 0.313364980275983 0.199746913173288 0.199746659272367 0.120316613087275 0.221102206170602 0.368021087850449 0.120324438962491 0.368020740508678 0.247696648887958 0.247696301546187 NA NA 0.99399012987845 0.00350258662967115 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "logistic sigmoid." 2.74248926201157 0.0354379553926203 4.43294833333333 0.0945867701955495 0.00125702159577835 0.120482088801679 0.00134117834599991 0.32177887516419 0.00144348747790325 0.442260963965869 0.122204770404787 0.442260963925467 0.320056193561082 0.32005619352068 0.12804053622706 0.379579682895796 0.556221805261732 0.129985465672481 0.556221805198858 0.426236339589251 0.426236339526377 NA NA 0.998757902847438 0.00205103195615211 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards sigmoid" 3.06558696223571 0.0312092193543957 5.3624375 0.121127558311403 0.000999219504341884 0.0914412547332416 0.00245736106561066 0.492484364444972 0.00245078801862176 0.583925619178214 0.10090202921227 0.583925619102095 0.483023589965944 0.483023589889825 0.0957524045344744 0.636376529891633 0.793063517352536 0.106168264278383 0.79306351721605 0.686895253074153 0.686895252937667 1.80996092627302 0.117497603933281 0.999544726321195 0.00181967924857191 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards sigmoid" 2.77641833187198 0.0527034516734386 5.62460111111111 0.129882570160111 0.00113584996869085 0.0943645434950579 0.00505890911787811 0.678399507081888 0.00501032007418759 0.772764050576946 0.11484805727615 0.77276399934955 0.657915993300795 0.657915942073399 0.0989602917302299 0.97072108167106 1.16574421483214 0.12170299001548 1.16574410388671 1.04404122481666 1.04404111387123 1.58781592816572 0.131684393376964 0.999371589849352 0.00464022682166854 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards sigmoid" 2.62155170729439 0.0528519100950448 5.64843416666667 0.120898389355078 0.000856667358787892 0.106939412411106 0.00473823154418831 0.792250602933212 0.00464150376049532 0.899190015344318 0.119165060839678 0.899150109300876 0.78002495450464 0.779985048461198 0.112866826518918 1.20836098124136 1.45761167700228 0.126555853197717 1.45751360540077 1.33105582380456 1.33095775220305 0.651987010079984 0.0715475157170284 0.999508942394936 0.00516491712891745 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "gompertz sigmoid" 0 5.0780526120225 14.0138366666667 0.00262196611873332 0.00018437938744914 0.128373333313586 0.0113746241547247 0.0999846427550281 0.0508218894501574 0.228357976068614 0.134971123503685 0.189191289569101 0.0933868525649285 0.0542201660654161 0.136977395010588 0.105153945825447 0.256535054410289 0.144503734616262 0.208272060219704 0.112031319794027 0.0637683256034425 NA NA 0.855383080839261 0.00575026814686199 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "gompertz sigmoid" 0.891438154862617 0.0875315924591966 2.31180638888889 0.0535113235044828 0.00124573544664028 0.0881434958395649 0.00304307272545713 0.207061853609148 0.00316468246722843 0.295205349448713 0.0894254262692569 0.295205293059733 0.205779923179456 0.205779866790477 0.0921448290236948 0.230058652994932 0.343402197264266 0.0935457804829503 0.343402121511189 0.249856416781316 0.249856341028238 NA NA 0.991724253334924 0.00363563892033091 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic sigmoid." 1.64713494830746 0.0412877829637357 3.38429388888889 0.0931935829835479 0.00118142556806869 0.0808528949077067 0.00187894210009506 0.326765480130978 0.00196420648303134 0.407618375038685 0.0874704775763749 0.407618375014084 0.32014789746231 0.320147897437709 0.0842113918182088 0.386476282813275 0.503233380311918 0.0914100428976898 0.503233380274936 0.411823337414228 0.411823337377247 NA NA 0.998561073647885 0.00184537988196709 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards sigmoid" 2.00035124383545 0.0281455446975304 4.31378305555555 0.124952394681256 0.000705710849322313 0.066176309959304 0.00266242484922488 0.497003217300128 0.00264805311701161 0.563179527259432 0.0884800685969233 0.563179527257016 0.474699458662509 0.474699458660092 0.0684150727790216 0.643787807270277 0.756247669737942 0.0925124770869246 0.756247669733698 0.663735192651017 0.663735192646773 2.09745464546466 0.104168274133155 0.999771040591133 0.00072098110255013 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards sigmoid" 2.0490071997567 0.0662248504953823 4.76661111111111 0.13306744704186 0.00129515567791922 0.0751622402050358 0.00684502394093866 0.656973009903259 0.00678618652478681 0.732135250108295 0.103854790297524 0.732135243114114 0.628280459810771 0.62828045281659 0.0780590412170139 0.92894459216055 1.07951615758535 0.10943934186153 1.07951614304083 0.970076815723817 0.970076801179305 1.62672197615846 0.161151121349594 0.999229593966034 0.00459582695233057 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "logistic sigmoid." 1.98629177172554 0.0661342221284037 5.19560611111111 0.122957280170312 0.00117607964263019 0.0764858915144976 0.00452433442917892 0.793858352641992 0.00487921879564307 0.870344244156489 0.106676773149917 0.870336478987225 0.763667471006573 0.763659705837308 0.0794869603035999 1.21191432864705 1.38773267508318 0.112574582376872 1.38771413400679 1.27515809270631 1.27513955162992 NA NA 0.998885750680602 0.0103824045406066 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "gompertz sigmoid" 0 3.37960900118466 11.4875327777778 0.00260114799703032 0.000171113335294184 0.0996380871643661 0.00702344449132755 0.0812678741827026 0.0218737314876996 0.180905961347069 0.105000794559007 0.157379078978817 0.075905166788062 0.0523782844198106 0.104771014904237 0.084661410443271 0.198302487242874 0.110711492881175 0.17043921871877 0.0875909943616988 0.0597277258375952 NA NA 0.906033844889994 0.00328284811832938 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "gompertz sigmoid" 0.983948183597175 0.112859786286644 2.47863777777778 0.0501739409645355 0.00144200881080694 0.0661469359457048 0.00364271202623762 0.205919623922245 0.00380546132645363 0.27206655986795 0.0672650583629558 0.272066410063879 0.204801501504994 0.204801351700923 0.0683836896010714 0.228654445601205 0.312674369836174 0.0695789414490573 0.312674173192226 0.243095428387117 0.243095231743168 NA NA 0.987488271024703 0.00577672548033825 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "richards sigmoid" 1.86398050594022 0.0558531581780885 3.55112527777778 0.0944346403793218 0.00150539518734246 0.0602064687184575 0.00349724664000438 0.368213525552587 0.00348116438514935 0.428419994271045 0.0619674090584591 0.428419978577839 0.366452585212586 0.36645256951938 0.0620558052105851 0.445150582608455 0.534830565662769 0.0639276697585029 0.534830541576357 0.470902895904266 0.470902871817855 0.41241007480043 0.120556305314198 0.997911612798025 0.00385752298874987 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "logistic sigmoid." 1.99006793380884 0.0351079474960275 4.12311861111111 0.121142575431043 0.00106707303416645 0.0644342397186312 0.00208740714872881 0.517632133522502 0.00221049055518603 0.582066373241133 0.0750837822538967 0.582066368203544 0.506982590987236 0.506982585949648 0.0665554389527234 0.678049544482632 0.789732868500092 0.0779744622314236 0.789732859484154 0.711758406268668 0.71175839725273 NA NA 0.999269039916925 0.00268951955610802 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "logistic sigmoid." 1.98431414913883 0.0344438902457988 4.48061444444444 0.130673511563394 0.000910297701821604 0.0736708018228489 0.00232986507621017 0.655420765541249 0.00247952515524191 0.729091567364097 0.0914028197402174 0.729091436186734 0.63768874762388 0.637688616446517 0.0764523809998565 0.925952721450692 1.07319639269875 0.0957102901077889 1.07319612074233 0.977486102590961 0.977485830634544 NA NA 0.999493885845309 0.00307265449990923 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "logistic sigmoid." 2.10388607358557 0.0485609580954195 5.24327222222222 0.128060724388346 0.000947720103104396 0.0637480626845324 0.00338335491744478 0.806179689301617 0.00365527295985513 0.869927751986149 0.0914242899462062 0.869921741898693 0.778503462039943 0.778497451952487 0.0658238441354071 1.23933666273098 1.38673841018529 0.0957338154859682 1.38672406572182 1.29100459469932 1.29099025023585 NA NA 0.999357534856407 0.00631075803154068 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "logistic sigmoid." 9.73707675795057 0.0985970533305578 14.6811622222222 0.0827678159518767 0.00119202041574655 -0.000880352187845948 0.00297599235664884 0.821196181140969 0.00723578634320824 0.820315828953123 0.00130662738981984 0.80016942429868 0.819009201563303 0.79886279690886 -0.000879964791548726 1.27321739163809 1.27121704036991 0.00130748139930459 1.22591802114689 1.2699095589706 1.22461053974758 NA NA 0.997343483064722 0.0337108649740508 "E*" "L" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards sigmoid" 3.77043529293613 0.0360628422979525 7.69807694444444 0.0922143076373947 0.000396448194603239 0.0415079420521979 0.00249398077489825 0.670137254883342 0.00244318042181785 0.71164519693554 0.0610249599211764 0.711620409573069 0.650620237014363 0.650595449651893 0.0423814404664091 0.954505567660092 1.03734032901714 0.0629254443914062 1.03728982934981 0.974414884625737 0.974364384958405 1.49636190326278 0.0645036016880811 0.999821079386736 0.00149128792010239 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards sigmoid" 3.81401380371595 0.0414172658123116 7.84107527777778 0.0912912497086539 0.000430847222656137 0.0416798125769253 0.00284816947390064 0.69143284133484 0.00278081561682767 0.733112653911766 0.0607785098125833 0.73305639362929 0.672334144099182 0.672277883816707 0.0425606105081318 0.996574258830031 1.08154967821066 0.0626635185773581 1.08143257293199 1.0188861596333 1.01876905435464 1.38211643616927 0.068441420394402 0.999776277423773 0.00199878407126496 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards sigmoid" 4.10969518183839 0.0412228717219101 8.43690166666667 0.0887040084623295 0.000394405492929288 0.0340862871852733 0.00276975733383969 0.70953425876434 0.00269646137747281 0.743620545949613 0.0553702983243347 0.743521928280257 0.688250247625278 0.688151629955922 0.034673881973359 1.03304416561189 1.10353769905694 0.0569319223405151 1.10333026330024 1.04660577671642 1.04639834095972 1.51337755174144 0.0684110305817092 0.999797902728699 0.00192728932795894 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards sigmoid" 4.24887937601734 0.0432115785663927 8.81823055555555 0.0859527181410838 0.000375029672246797 0.0356447291331235 0.00283858611378653 0.730548134285546 0.00274599564832944 0.766192863418669 0.0570847529310588 0.765947841016383 0.70910811048761 0.708863088085324 0.0362876182839384 1.07621834228765 1.15155936096669 0.0587455383807147 1.15103224530362 1.09281382258598 1.0922867069229 1.43679372443259 0.0664148620205159 0.999795584571703 0.00207184898977108 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards sigmoid" 4.18007396642371 0.0466407733724283 8.81823055555555 0.0839684559025767 0.000369760007946289 0.0335662062693272 0.00302321134929714 0.761208314991861 0.00289043066835203 0.794774521261188 0.0523578984758354 0.794000059559319 0.742416622785352 0.741642161083483 0.0341359077403089 1.14086149330819 1.21394174372853 0.0537528115582857 1.21222779441756 1.16018893217025 1.15847498285928 1.13197498623035 0.0608907037432053 0.999775581271097 0.00245341232352351 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards sigmoid" 4.31631141456833 0.0375067738225389 9.10422722222222 0.0746869165814573 0.000251011212616688 0.0449034082917984 0.00217539454600581 0.811374096629365 0.0020199781451565 0.856277504921164 0.0531730581528585 0.847610694845515 0.803104446768305 0.794437636692656 0.0459268271704429 1.25099895262068 1.35438019247854 0.0546121385565925 1.33406339459093 1.29976805392195 1.27945125603434 0.475355275365838 0.0354989182491613 0.99984356158066 0.00187490302158927 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards sigmoid" 2.71231721101246 0.051377222191618 6.24426055555555 0.114869798087755 0.000679522317637316 0.0686814145642472 0.00460568272264885 0.729956501290573 0.00454362062059059 0.798637915854821 0.10099640348141 0.798636815214796 0.697641512373411 0.697640411733386 0.0710949195446084 1.07499034630887 1.22251161803554 0.10627266302607 1.22250917185165 1.11623895500947 1.11623650882558 1.70292251675116 0.10179548101048 0.999686879664103 0.00266681050440312 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards sigmoid" 3.01070188606209 0.0455540510180634 6.55409027777778 0.115107998074341 0.000641488536342826 0.0614813761638786 0.00401667627257402 0.743382938801471 0.00395687893333818 0.804864314965349 0.0885306662587629 0.804861736607772 0.716333648706586 0.716331070349009 0.0634106915579287 1.10303794283843 1.23639303316638 0.0925677570623027 1.23638726695289 1.14382527610408 1.14381950989059 1.57881072796814 0.0887320125722592 0.999717695034928 0.00263054987530885 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards sigmoid" 2.97864249972838 0.0440943285573364 6.55409027777778 0.114576828102917 0.000592514268492699 0.0574375614416587 0.0038875686917152 0.760494448227834 0.00382450823238821 0.817932009669493 0.0846335570605372 0.817926981908608 0.733298452608956 0.733293424848071 0.059119138718029 1.13933374880962 1.26580931746965 0.0883181871040035 1.26579792555084 1.17749113036565 1.17747973844683 1.48473851369249 0.0802727796034772 0.999751240782926 0.00242858216652038 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards sigmoid" 2.92985461453388 0.0457749726886301 6.57792333333333 0.113561152688866 0.000574978160263558 0.060472124586291 0.00402516587449496 0.782067831893148 0.00395231319695858 0.842539956479439 0.0880742344239483 0.842528715447582 0.754465722055491 0.754454481023634 0.0623379840467781 1.18598785054918 1.32225792630317 0.0920691881463056 1.32223182187456 1.23018873815686 1.23016263372825 1.37581261909432 0.0764095517760612 0.999754748600533 0.00252958095458289 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards sigmoid" 3.04342230131477 0.0449382687527419 6.81625388888889 0.111344220886614 0.00053211483862603 0.0556626629934722 0.00387136841849492 0.807214512297039 0.00378851478092936 0.862877175290511 0.0817091172313295 0.862843943373837 0.781168058059181 0.781134826142507 0.0572409770684312 1.24165517922426 1.36996971193357 0.0851401153555837 1.36989095460621 1.28482959657798 1.28475083925063 1.25155544499941 0.0687282596513218 0.999773222693453 0.00254586287935126 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards sigmoid" 3.40984196234943 0.0273360225985238 7.17374972222222 0.104909950247054 0.000320509638786788 0.0670946887710371 0.00214797629965173 0.835221165477497 0.00207744941670489 0.902315854248534 0.0807525020643599 0.901946971348112 0.821563352184174 0.821194469283752 0.0693967332430874 1.30532384995973 1.46530579421431 0.0841025502173454 1.46439655277464 1.38120324399697 1.38029400255729 0.753286731439822 0.0336141517371988 0.999897955876558 0.00130605700907156 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards sigmoid" 2.43102440775711 0.0454605985590097 5.50543583333333 0.126842367574397 0.000788090696060512 0.0539690230506907 0.00446798137137374 0.690558562368951 0.00442509749533481 0.744527585419641 0.0857310638249255 0.74452755483612 0.658796521594716 0.658796491011195 0.0554519069684636 0.994829458783827 1.10544655635026 0.0895132793671187 1.10544649195829 1.01593327698314 1.01593321259117 1.86325174039779 0.111013983680208 0.999682108231503 0.00226178478453787 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards sigmoid" 2.48092971341753 0.0462358408909463 5.62460111111111 0.126022327995321 0.000766265198216623 0.0498912361992905 0.00451231731412719 0.714630509305857 0.00446315308100269 0.764521745505147 0.0803254380277494 0.764521612664574 0.684196307477398 0.684196174636825 0.0511567623538203 1.04343151382482 1.14796685416386 0.0836396678533904 1.14796656882673 1.06432718631047 1.06432690097334 1.6892416239556 0.102428344960951 0.999685472160361 0.00245503448373934 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards sigmoid" 2.42408640744135 0.0532786618803828 5.62460111111111 0.124384376977411 0.000823105161949976 0.0492950122622815 0.00516311815303983 0.727641420856731 0.00510226521814267 0.776936433119012 0.0803276492472531 0.776936116027565 0.696608783871759 0.696608466780311 0.0505302243276007 1.07019213302561 1.17479940590863 0.0836420640212081 1.17479871629844 1.09115734188742 1.09115665227723 1.58714593821028 0.108898701673299 0.999619231516236 0.00307919508939737 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards sigmoid" 2.3516083906569 0.0596596631244507 5.69610027777778 0.122918277329311 0.000825310524938601 0.0456238028839663 0.00577234400145717 0.757677923259936 0.00569718881396185 0.803301726143903 0.0794802281473059 0.803300765454603 0.723821497996597 0.723820537307297 0.0466805786671931 1.1333167393977 1.23290119927319 0.0827241518553661 1.23289905414994 1.15017704741783 1.15017490229457 1.50943196721409 0.109906089971898 0.999597425228284 0.00351671862436235 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards sigmoid" 2.5236010165651 0.0587446480551128 5.93443083333333 0.120073445181908 0.000783304897530514 0.0450247442396835 0.00549978744950499 0.786911440589629 0.00540921373997301 0.831936184829312 0.0732958505454819 0.831929765474958 0.75864033428383 0.758633914929476 0.0460537433930304 1.19660160399639 1.29776333060356 0.0760488394635108 1.29774858049386 1.22171449114005 1.22169974103035 1.2397630247936 0.0944772278955165 0.999601760903923 0.00394547420222901 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards sigmoid" 2.58690524730753 0.0503605394422555 6.17276138888889 0.109989495010269 0.000552298616707589 0.0475039668950725 0.00430649396880978 0.83068144919568 0.00419058755640174 0.878185416090752 0.0684271066193943 0.878046704871374 0.809758309471358 0.80961959825198 0.0486503609989841 1.2948820530738 1.40652889340594 0.0708225662291506 1.40619510399936 1.33570632717678 1.33537253777021 0.776030021315298 0.0590320987662605 0.999743045862095 0.00295407387389294 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards sigmoid" 2.17498330451382 0.0502798395951241 5.12410694444444 0.122218804779539 0.000784428545413071 0.0435682252869189 0.00476512105024793 0.699692212079932 0.00470444935542924 0.743260437366851 0.0678435113592805 0.743259718765618 0.67541692600757 0.675416207406337 0.0445312553256874 1.01313299408815 1.10278033345246 0.0701978215718182 1.10277882239246 1.03258251188064 1.03258100082064 1.18141837167591 0.0894530619922231 0.999633683586648 0.00265620405353138 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards sigmoid" 2.51277041358427 0.0385075634064252 5.50543583333333 0.124302687102611 0.000662579603795554 0.0363365047244458 0.00363658784524449 0.715682301787501 0.00358889800467861 0.752018806511947 0.0575296223014987 0.75201790943738 0.694489184210448 0.694488287135881 0.0370047447805615 1.04558191041505 1.12127814693769 0.0592166466248745 1.12127624399387 1.06206150031282 1.062059597369 1.22124196187785 0.0728117473772727 0.999746251949321 0.00205128571327075 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards sigmoid" 2.53563260737677 0.0376782240880802 5.60076805555555 0.122775490964049 0.000617718940237756 0.0383224027816064 0.00352849516406259 0.723989555808605 0.00348019897003327 0.762311958590212 0.0604113492179259 0.762310653602122 0.701900609372286 0.701899304384196 0.0390661767078291 1.06264585810741 1.14322554568591 0.0622734220263796 1.14322274880392 1.08095212365953 1.08094932677754 1.22916202573701 0.0694532756349596 0.999772141364762 0.00189783824442075 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "logistic sigmoid." 2.60565520411145 0.0279148207786424 5.67226722222222 0.122180167529517 0.000572646164016784 0.0367511554868138 0.00173132045208087 0.75510174924411 0.00189799830326426 0.791852904730924 0.0552120643649708 0.791846881057418 0.736640840365953 0.736634816692447 0.0374348287497246 1.12782801723342 1.20748289466742 0.0567646930486905 1.20746959755124 1.15071820161873 1.15070490450255 NA NA 0.999760229166242 0.00222986115644153 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "logistic sigmoid." 2.59552092034145 0.0233507552285751 5.7914325 0.12311239814861 0.000459924953718036 0.0376321525320693 0.00147723901592513 0.788206013379693 0.00162316638429969 0.825838165911762 0.0581595525832075 0.82582810286149 0.767678613328555 0.767668550278282 0.0383492084922821 1.19944710612095 1.28379416176132 0.0598840894646306 1.2837711799415 1.22391007229669 1.22388709047687 NA NA 0.999844012469462 0.00158372380662876 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards sigmoid" 2.65619332146438 0.0304232772610151 6.00593 0.113927548226674 0.000394015356154558 0.0448535113624544 0.00262903429411648 0.830698452896991 0.00255902360970839 0.875551964259445 0.0596126030160059 0.875406838654098 0.815939361243439 0.815794235638092 0.0458746399354508 1.29492107489454 1.4001997528856 0.0614252739377605 1.39985144771812 1.33877447894784 1.33842617378036 0.630436857242866 0.0359660377290858 0.999878122228538 0.0014247167012055 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "richards sigmoid" 14.4916170457847 0.0217082069318843 18.6612825 0.0889624209370597 0.000433181631551599 0.00193467418446847 0.000448535101404725 0.976169168246482 0.0129778271847923 0.97810384243095 0.00193467418448112 0.752023542360525 0.976169168246469 0.750088868176044 0.00193654687405509 1.65426868422052 1.65940879994385 0.00193654687406775 1.12128819301358 1.65747225306978 1.11935164613951 0.07 0.0304918969768742 0.999799864971328 0.00156360720906969 "E*" "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
# Raw OD values are adjusted and log-transformed before fitting a growth curve as follows: log.OD = log(OD - blank + const) where blank is OD of blank medium and const is specified by the user (1 by default)
# Values are reported on the above 'log.OD' scale unless otherwise specified.
# .SE columns report standard errors of those values that are estimated directly as parameters of global sigmoid models.
# .OD columns report values back-transformed to the linear 'OD - blank' scale.
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - lag.time: Lag time estimate inferred from the fitted model
# - inflection.time: inflection time point of the growth curve when drawn on the log scale
# - max.spec.growth.rate: maximum specific growth rate estimate inferred from the fitted model. Estimated as the first derivative of the growth curve at inflection time point
# - baseline: growth curve baseline. Global sigmoid model: baseline is parameter 'b' of the model. LOESS: baseline is the same as the lowest predicted log.OD value
# - amplitude: difference between upper plateau and baseline values. Global sigmoid model: amplitude is parameter 'A' of the model. LOESS: amplitude = max.log.OD - min.log.OD
# - plateau: upper asymptote value of the fitted model. Global sigmoid model: plateau = b + A. LOESS: plateau = max.log.OD
# - inoc.log.OD: log.OD value at inoculation. Estimated value from the fitted model is used, rather than the actual measurement
# - max.log.OD: maximal log.OD value reached during the experiment. Estimated value from the fitted model is used rather than the actual measurement
# - projected.growth: maximal projected growth over inoculation value. Global sigmoid model: projected.growth = plateau - inoc.log.OD. LOESS: not reported
# - achieved.growth: maximal growth over inoculation value actually achieved during the experiment. achieved.growth = max.log.OD - inoc.log.OD
# - shape.par: shape parameter of the Richard equation
# - R.squared: goodness of fit metric. Also known as coefficient of determination. R.squared is usually between 0 and 1. A value close to 1 indicates good fit.
# - RSS: residual sum of squares. Another goodness of fit metric. Smaller values indicate better fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - asymp.not.reached: shows “L” if the bottom asymptote (baseline) was not reached and “U” if the upper asymptote (plateau) was not reached.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - other: Additional flag column. Displays information about whether jumps in OD were detected and what was done about them.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 5.0
# request sent: 2015-04-07 15:34:27
# completed: 2015-04-07 15:34:33
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: First timepoint in well
# - Index of inoculation timepoint 2
# - Minimum growth threshold: 0.05
# - Removed points:
# - Jump detection: FALSE
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Destination plate name,Row,Column,Well ID,Plate source,Well Source,Strain,Media Definition
Control strain plate,A,1,Empty,Empty,Empty,Empty,None
Control strain plate,A,2,Empty,Empty,Empty,Empty,None
Control strain plate,A,3,Empty,Empty,Empty,Empty,None
Control strain plate,A,4,Empty,Empty,Empty,Empty,None
Control strain plate,A,5,Empty,Empty,Empty,Empty,None
Control strain plate,A,6,Empty,Empty,Empty,Empty,None
Control strain plate,A,7,Empty,Empty,Empty,Empty,None
Control strain plate,A,8,Empty,Empty,Empty,Empty,None
Control strain plate,A,9,Empty,Empty,Empty,Empty,None
Control strain plate,A,10,Empty,Empty,Empty,Empty,None
Control strain plate,A,11,Empty,Empty,Empty,Empty,None
Control strain plate,A,12,Empty,Empty,Empty,Empty,None
Control strain plate,B,1,Empty,Empty,Empty,Empty,None
Control strain plate,B,2,Sample,USDA,,Lab strain,YP
Control strain plate,B,3,Sample,USDA,,Wild strain,YP
Control strain plate,B,4,Sample,Internal source,,Industrial strain,YP
Control strain plate,B,5,Sample,ATCC,,Engineered strain,YP
Control strain plate,B,6,Empty,Empty,Empty,Empty,None
Control strain plate,B,7,Sample,USDA,,Lab strain,AFEX
Control strain plate,B,8,Sample,USDA,,Wild strain,AFEX
Control strain plate,B,9,Sample,Internal source,,Industrial strain,AFEX
Control strain plate,B,10,Sample,ATCC,,Engineered strain,AFEX
Control strain plate,B,11,Empty,Empty,Empty,Empty,None
Control strain plate,B,12,Empty,Empty,Empty,Empty,None
Control strain plate,C,1,Empty,Empty,Empty,Empty,None
Control strain plate,C,2,Sample,USDA,,Lab strain,YP+0.25% glucose
Control strain plate,C,3,Sample,USDA,,Wild strain,YP+0.25% glucose
Control strain plate,C,4,Sample,Internal source,,Industrial strain,YP+0.25% glucose
Control strain plate,C,5,Sample,ATCC,,Engineered strain,YP+0.25% glucose
Control strain plate,C,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,C,7,Sample,USDA,,Lab strain,AFEX+0.25% glucose
Control strain plate,C,8,Sample,USDA,,Wild strain,AFEX+0.25% glucose
Control strain plate,C,9,Sample,Internal source,,Industrial strain,AFEX+0.25% glucose
Control strain plate,C,10,Sample,ATCC,,Engineered strain,AFEX+0.25% glucose
Control strain plate,C,11,Empty,Empty,Empty,Empty,None
Control strain plate,C,12,Empty,Empty,Empty,Empty,None
Control strain plate,D,1,Empty,Empty,Empty,Empty,None
Control strain plate,D,2,Sample,USDA,,Lab strain,YP+0.5% glucose
Control strain plate,D,3,Sample,USDA,,Wild strain,YP+0.5% glucose
Control strain plate,D,4,Sample,Internal source,,Industrial strain,YP+0.5% glucose
Control strain plate,D,5,Sample,ATCC,,Engineered strain,YP+0.5% glucose
Control strain plate,D,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,D,7,Sample,USDA,,Lab strain,AFEX+0.5% glucose
Control strain plate,D,8,Sample,USDA,,Wild strain,AFEX+0.5% glucose
Control strain plate,D,9,Sample,Internal source,,Industrial strain,AFEX+0.5% glucose
Control strain plate,D,10,Sample,ATCC,,Engineered strain,AFEX+0.5% glucose
Control strain plate,D,11,Empty,Empty,Empty,Empty,None
Control strain plate,D,12,Empty,Empty,Empty,Empty,None
Control strain plate,E,1,Empty,Empty,Empty,Empty,None
Control strain plate,E,2,Sample,USDA,,Lab strain,YP+1% glucose
Control strain plate,E,3,Sample,USDA,,Wild strain,YP+1% glucose
Control strain plate,E,4,Sample,Internal source,,Industrial strain,YP+1% glucose
Control strain plate,E,5,Sample,ATCC,,Engineered strain,YP+1% glucose
Control strain plate,E,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,E,7,Sample,USDA,,Lab strain,AFEX+1% glucose
Control strain plate,E,8,Sample,USDA,,Wild strain,AFEX+1% glucose
Control strain plate,E,9,Sample,Internal source,,Industrial strain,AFEX+1% glucose
Control strain plate,E,10,Sample,ATCC,,Engineered strain,AFEX+1% glucose
Control strain plate,E,11,Empty,Empty,Empty,Empty,None
Control strain plate,E,12,Empty,Empty,Empty,Empty,None
Control strain plate,F,1,Empty,Empty,Empty,Empty,None
Control strain plate,F,2,Sample,USDA,,Lab strain,YP+2% glucose
Control strain plate,F,3,Sample,USDA,,Wild strain,YP+2% glucose
Control strain plate,F,4,Sample,Internal source,,Industrial strain,YP+2% glucose
Control strain plate,F,5,Sample,ATCC,,Engineered strain,YP+2% glucose
Control strain plate,F,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,F,7,Sample,USDA,,Lab strain,AFEX+2% glucose
Control strain plate,F,8,Sample,USDA,,Wild strain,AFEX+2% glucose
Control strain plate,F,9,Sample,Internal source,,Industrial strain,AFEX+2% glucose
Control strain plate,F,10,Sample,ATCC,,Engineered strain,AFEX+2% glucose
Control strain plate,F,11,Empty,Empty,Empty,Empty,None
Control strain plate,F,12,Empty,Empty,Empty,Empty,None
Control strain plate,G,1,Empty,Empty,Empty,Empty,None
Control strain plate,G,2,Sample,USDA,,Lab strain,YP+5% glucose
Control strain plate,G,3,Sample,USDA,,Wild strain,YP+5% glucose
Control strain plate,G,4,Sample,Internal source,,Industrial strain,YP+5% glucose
Control strain plate,G,5,Sample,ATCC,,Engineered strain,YP+5% glucose
Control strain plate,G,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,G,7,Sample,USDA,,Lab strain,AFEX+5% glucose
Control strain plate,G,8,Sample,USDA,,Wild strain,AFEX+5% glucose
Control strain plate,G,9,Sample,Internal source,,Industrial strain,AFEX+5% glucose
Control strain plate,G,10,Sample,ATCC,,Engineered strain,AFEX+5% glucose
Control strain plate,G,11,Empty,Empty,Empty,Empty,None
Control strain plate,G,12,Empty,Empty,Empty,Empty,None
Control strain plate,H,1,Empty,Empty,Empty,Empty,None
Control strain plate,H,2,Empty,Empty,Empty,Empty,None
Control strain plate,H,3,Empty,Empty,Empty,Empty,None
Control strain plate,H,4,Empty,Empty,Empty,Empty,None
Control strain plate,H,5,Empty,Empty,Empty,Empty,None
Control strain plate,H,6,Empty,Empty,Empty,Empty,None
Control strain plate,H,7,Empty,Empty,Empty,Empty,None
Control strain plate,H,8,Empty,Empty,Empty,Empty,None
Control strain plate,H,9,Empty,Empty,Empty,Empty,None
Control strain plate,H,10,Empty,Empty,Empty,Empty,None
Control strain plate,H,11,Empty,Empty,Empty,Empty,None
Control strain plate,H,12,Empty,Empty,Empty,Empty,None
1 Destination plate name Row Column Well ID Plate source Well Source Strain Media Definition
2 Control strain plate A 1 Empty Empty Empty Empty None
3 Control strain plate A 2 Empty Empty Empty Empty None
4 Control strain plate A 3 Empty Empty Empty Empty None
5 Control strain plate A 4 Empty Empty Empty Empty None
6 Control strain plate A 5 Empty Empty Empty Empty None
7 Control strain plate A 6 Empty Empty Empty Empty None
8 Control strain plate A 7 Empty Empty Empty Empty None
9 Control strain plate A 8 Empty Empty Empty Empty None
10 Control strain plate A 9 Empty Empty Empty Empty None
11 Control strain plate A 10 Empty Empty Empty Empty None
12 Control strain plate A 11 Empty Empty Empty Empty None
13 Control strain plate A 12 Empty Empty Empty Empty None
14 Control strain plate B 1 Empty Empty Empty Empty None
15 Control strain plate B 2 Sample USDA Lab strain YP
16 Control strain plate B 3 Sample USDA Wild strain YP
17 Control strain plate B 4 Sample Internal source Industrial strain YP
18 Control strain plate B 5 Sample ATCC Engineered strain YP
19 Control strain plate B 6 Empty Empty Empty Empty None
20 Control strain plate B 7 Sample USDA Lab strain AFEX
21 Control strain plate B 8 Sample USDA Wild strain AFEX
22 Control strain plate B 9 Sample Internal source Industrial strain AFEX
23 Control strain plate B 10 Sample ATCC Engineered strain AFEX
24 Control strain plate B 11 Empty Empty Empty Empty None
25 Control strain plate B 12 Empty Empty Empty Empty None
26 Control strain plate C 1 Empty Empty Empty Empty None
27 Control strain plate C 2 Sample USDA Lab strain YP+0.25% glucose
28 Control strain plate C 3 Sample USDA Wild strain YP+0.25% glucose
29 Control strain plate C 4 Sample Internal source Industrial strain YP+0.25% glucose
30 Control strain plate C 5 Sample ATCC Engineered strain YP+0.25% glucose
31 Control strain plate C 6 Empty Empty Empty Empty Empty
32 Control strain plate C 7 Sample USDA Lab strain AFEX+0.25% glucose
33 Control strain plate C 8 Sample USDA Wild strain AFEX+0.25% glucose
34 Control strain plate C 9 Sample Internal source Industrial strain AFEX+0.25% glucose
35 Control strain plate C 10 Sample ATCC Engineered strain AFEX+0.25% glucose
36 Control strain plate C 11 Empty Empty Empty Empty None
37 Control strain plate C 12 Empty Empty Empty Empty None
38 Control strain plate D 1 Empty Empty Empty Empty None
39 Control strain plate D 2 Sample USDA Lab strain YP+0.5% glucose
40 Control strain plate D 3 Sample USDA Wild strain YP+0.5% glucose
41 Control strain plate D 4 Sample Internal source Industrial strain YP+0.5% glucose
42 Control strain plate D 5 Sample ATCC Engineered strain YP+0.5% glucose
43 Control strain plate D 6 Empty Empty Empty Empty Empty
44 Control strain plate D 7 Sample USDA Lab strain AFEX+0.5% glucose
45 Control strain plate D 8 Sample USDA Wild strain AFEX+0.5% glucose
46 Control strain plate D 9 Sample Internal source Industrial strain AFEX+0.5% glucose
47 Control strain plate D 10 Sample ATCC Engineered strain AFEX+0.5% glucose
48 Control strain plate D 11 Empty Empty Empty Empty None
49 Control strain plate D 12 Empty Empty Empty Empty None
50 Control strain plate E 1 Empty Empty Empty Empty None
51 Control strain plate E 2 Sample USDA Lab strain YP+1% glucose
52 Control strain plate E 3 Sample USDA Wild strain YP+1% glucose
53 Control strain plate E 4 Sample Internal source Industrial strain YP+1% glucose
54 Control strain plate E 5 Sample ATCC Engineered strain YP+1% glucose
55 Control strain plate E 6 Empty Empty Empty Empty Empty
56 Control strain plate E 7 Sample USDA Lab strain AFEX+1% glucose
57 Control strain plate E 8 Sample USDA Wild strain AFEX+1% glucose
58 Control strain plate E 9 Sample Internal source Industrial strain AFEX+1% glucose
59 Control strain plate E 10 Sample ATCC Engineered strain AFEX+1% glucose
60 Control strain plate E 11 Empty Empty Empty Empty None
61 Control strain plate E 12 Empty Empty Empty Empty None
62 Control strain plate F 1 Empty Empty Empty Empty None
63 Control strain plate F 2 Sample USDA Lab strain YP+2% glucose
64 Control strain plate F 3 Sample USDA Wild strain YP+2% glucose
65 Control strain plate F 4 Sample Internal source Industrial strain YP+2% glucose
66 Control strain plate F 5 Sample ATCC Engineered strain YP+2% glucose
67 Control strain plate F 6 Empty Empty Empty Empty Empty
68 Control strain plate F 7 Sample USDA Lab strain AFEX+2% glucose
69 Control strain plate F 8 Sample USDA Wild strain AFEX+2% glucose
70 Control strain plate F 9 Sample Internal source Industrial strain AFEX+2% glucose
71 Control strain plate F 10 Sample ATCC Engineered strain AFEX+2% glucose
72 Control strain plate F 11 Empty Empty Empty Empty None
73 Control strain plate F 12 Empty Empty Empty Empty None
74 Control strain plate G 1 Empty Empty Empty Empty None
75 Control strain plate G 2 Sample USDA Lab strain YP+5% glucose
76 Control strain plate G 3 Sample USDA Wild strain YP+5% glucose
77 Control strain plate G 4 Sample Internal source Industrial strain YP+5% glucose
78 Control strain plate G 5 Sample ATCC Engineered strain YP+5% glucose
79 Control strain plate G 6 Empty Empty Empty Empty Empty
80 Control strain plate G 7 Sample USDA Lab strain AFEX+5% glucose
81 Control strain plate G 8 Sample USDA Wild strain AFEX+5% glucose
82 Control strain plate G 9 Sample Internal source Industrial strain AFEX+5% glucose
83 Control strain plate G 10 Sample ATCC Engineered strain AFEX+5% glucose
84 Control strain plate G 11 Empty Empty Empty Empty None
85 Control strain plate G 12 Empty Empty Empty Empty None
86 Control strain plate H 1 Empty Empty Empty Empty None
87 Control strain plate H 2 Empty Empty Empty Empty None
88 Control strain plate H 3 Empty Empty Empty Empty None
89 Control strain plate H 4 Empty Empty Empty Empty None
90 Control strain plate H 5 Empty Empty Empty Empty None
91 Control strain plate H 6 Empty Empty Empty Empty None
92 Control strain plate H 7 Empty Empty Empty Empty None
93 Control strain plate H 8 Empty Empty Empty Empty None
94 Control strain plate H 9 Empty Empty Empty Empty None
95 Control strain plate H 10 Empty Empty Empty Empty None
96 Control strain plate H 11 Empty Empty Empty Empty None
97 Control strain plate H 12 Empty Empty Empty Empty None
Rails/public/resources/YPDAFEXglucoseTests_2-25-10.csv
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Rails/public/resources/YPDAFEXglucoseTests_2-25-10_Layout.csv
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Destination plate name,Row,Column,Well ID,Plate source,Well Source,Strain,Media Definition
Control strain plate,A,1,Empty,Empty,Empty,Empty,None
Control strain plate,A,2,Empty,Empty,Empty,Empty,None
Control strain plate,A,3,Empty,Empty,Empty,Empty,None
Control strain plate,A,4,Empty,Empty,Empty,Empty,None
Control strain plate,A,5,Empty,Empty,Empty,Empty,None
Control strain plate,A,6,Empty,Empty,Empty,Empty,None
Control strain plate,A,7,Empty,Empty,Empty,Empty,None
Control strain plate,A,8,Empty,Empty,Empty,Empty,None
Control strain plate,A,9,Empty,Empty,Empty,Empty,None
Control strain plate,A,10,Empty,Empty,Empty,Empty,None
Control strain plate,A,11,Empty,Empty,Empty,Empty,None
Control strain plate,A,12,Empty,Empty,Empty,Empty,None
Control strain plate,B,1,Empty,Empty,Empty,Empty,None
Control strain plate,B,2,Sample,USDA,,Lab strain,YP
Control strain plate,B,3,Sample,USDA,,Wild strain,YP
Control strain plate,B,4,Sample,Internal source,,Industrial strain,YP
Control strain plate,B,5,Sample,ATCC,,Engineered strain,YP
Control strain plate,B,6,Empty,Empty,Empty,Empty,None
Control strain plate,B,7,Sample,USDA,,Lab strain,AFEX
Control strain plate,B,8,Sample,USDA,,Wild strain,AFEX
Control strain plate,B,9,Sample,Internal source,,Industrial strain,AFEX
Control strain plate,B,10,Sample,ATCC,,Engineered strain,AFEX
Control strain plate,B,11,Empty,Empty,Empty,Empty,None
Control strain plate,B,12,Empty,Empty,Empty,Empty,None
Control strain plate,C,1,Empty,Empty,Empty,Empty,None
Control strain plate,C,2,Sample,USDA,,Lab strain,YP+0.25% glucose
Control strain plate,C,3,Sample,USDA,,Wild strain,YP+0.25% glucose
Control strain plate,C,4,Sample,Internal source,,Industrial strain,YP+0.25% glucose
Control strain plate,C,5,Sample,ATCC,,Engineered strain,YP+0.25% glucose
Control strain plate,C,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,C,7,Sample,USDA,,Lab strain,AFEX+0.25% glucose
Control strain plate,C,8,Sample,USDA,,Wild strain,AFEX+0.25% glucose
Control strain plate,C,9,Sample,Internal source,,Industrial strain,AFEX+0.25% glucose
Control strain plate,C,10,Sample,ATCC,,Engineered strain,AFEX+0.25% glucose
Control strain plate,C,11,Empty,Empty,Empty,Empty,None
Control strain plate,C,12,Empty,Empty,Empty,Empty,None
Control strain plate,D,1,Empty,Empty,Empty,Empty,None
Control strain plate,D,2,Sample,USDA,,Lab strain,YP+0.5% glucose
Control strain plate,D,3,Sample,USDA,,Wild strain,YP+0.5% glucose
Control strain plate,D,4,Sample,Internal source,,Industrial strain,YP+0.5% glucose
Control strain plate,D,5,Sample,ATCC,,Engineered strain,YP+0.5% glucose
Control strain plate,D,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,D,7,Sample,USDA,,Lab strain,AFEX+0.5% glucose
Control strain plate,D,8,Sample,USDA,,Wild strain,AFEX+0.5% glucose
Control strain plate,D,9,Sample,Internal source,,Industrial strain,AFEX+0.5% glucose
Control strain plate,D,10,Sample,ATCC,,Engineered strain,AFEX+0.5% glucose
Control strain plate,D,11,Empty,Empty,Empty,Empty,None
Control strain plate,D,12,Empty,Empty,Empty,Empty,None
Control strain plate,E,1,Empty,Empty,Empty,Empty,None
Control strain plate,E,2,Sample,USDA,,Lab strain,YP+1% glucose
Control strain plate,E,3,Sample,USDA,,Wild strain,YP+1% glucose
Control strain plate,E,4,Sample,Internal source,,Industrial strain,YP+1% glucose
Control strain plate,E,5,Sample,ATCC,,Engineered strain,YP+1% glucose
Control strain plate,E,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,E,7,Sample,USDA,,Lab strain,AFEX+1% glucose
Control strain plate,E,8,Sample,USDA,,Wild strain,AFEX+1% glucose
Control strain plate,E,9,Sample,Internal source,,Industrial strain,AFEX+1% glucose
Control strain plate,E,10,Sample,ATCC,,Engineered strain,AFEX+1% glucose
Control strain plate,E,11,Empty,Empty,Empty,Empty,None
Control strain plate,E,12,Empty,Empty,Empty,Empty,None
Control strain plate,F,1,Empty,Empty,Empty,Empty,None
Control strain plate,F,2,Sample,USDA,,Lab strain,YP+2% glucose
Control strain plate,F,3,Sample,USDA,,Wild strain,YP+2% glucose
Control strain plate,F,4,Sample,Internal source,,Industrial strain,YP+2% glucose
Control strain plate,F,5,Sample,ATCC,,Engineered strain,YP+2% glucose
Control strain plate,F,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,F,7,Sample,USDA,,Lab strain,AFEX+2% glucose
Control strain plate,F,8,Sample,USDA,,Wild strain,AFEX+2% glucose
Control strain plate,F,9,Sample,Internal source,,Industrial strain,AFEX+2% glucose
Control strain plate,F,10,Sample,ATCC,,Engineered strain,AFEX+2% glucose
Control strain plate,F,11,Empty,Empty,Empty,Empty,None
Control strain plate,F,12,Empty,Empty,Empty,Empty,None
Control strain plate,G,1,Empty,Empty,Empty,Empty,None
Control strain plate,G,2,Sample,USDA,,Lab strain,YP+5% glucose
Control strain plate,G,3,Sample,USDA,,Wild strain,YP+5% glucose
Control strain plate,G,4,Sample,Internal source,,Industrial strain,YP+5% glucose
Control strain plate,G,5,Sample,ATCC,,Engineered strain,YP+5% glucose
Control strain plate,G,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,G,7,Sample,USDA,,Lab strain,AFEX+5% glucose
Control strain plate,G,8,Sample,USDA,,Wild strain,AFEX+5% glucose
Control strain plate,G,9,Sample,Internal source,,Industrial strain,AFEX+5% glucose
Control strain plate,G,10,Sample,ATCC,,Engineered strain,AFEX+5% glucose
Control strain plate,G,11,Empty,Empty,Empty,Empty,None
Control strain plate,G,12,Empty,Empty,Empty,Empty,None
Control strain plate,H,1,Empty,Empty,Empty,Empty,None
Control strain plate,H,2,Empty,Empty,Empty,Empty,None
Control strain plate,H,3,Empty,Empty,Empty,Empty,None
Control strain plate,H,4,Empty,Empty,Empty,Empty,None
Control strain plate,H,5,Empty,Empty,Empty,Empty,None
Control strain plate,H,6,Empty,Empty,Empty,Empty,None
Control strain plate,H,7,Empty,Empty,Empty,Empty,None
Control strain plate,H,8,Empty,Empty,Empty,Empty,None
Control strain plate,H,9,Empty,Empty,Empty,Empty,None
Control strain plate,H,10,Empty,Empty,Empty,Empty,None
Control strain plate,H,11,Empty,Empty,Empty,Empty,None
Control strain plate,H,12,Empty,Empty,Empty,Empty,None
1 Destination plate name Row Column Well ID Plate source Well Source Strain Media Definition
2 Control strain plate A 1 Empty Empty Empty Empty None
3 Control strain plate A 2 Empty Empty Empty Empty None
4 Control strain plate A 3 Empty Empty Empty Empty None
5 Control strain plate A 4 Empty Empty Empty Empty None
6 Control strain plate A 5 Empty Empty Empty Empty None
7 Control strain plate A 6 Empty Empty Empty Empty None
8 Control strain plate A 7 Empty Empty Empty Empty None
9 Control strain plate A 8 Empty Empty Empty Empty None
10 Control strain plate A 9 Empty Empty Empty Empty None
11 Control strain plate A 10 Empty Empty Empty Empty None
12 Control strain plate A 11 Empty Empty Empty Empty None
13 Control strain plate A 12 Empty Empty Empty Empty None
14 Control strain plate B 1 Empty Empty Empty Empty None
15 Control strain plate B 2 Sample USDA Lab strain YP
16 Control strain plate B 3 Sample USDA Wild strain YP
17 Control strain plate B 4 Sample Internal source Industrial strain YP
18 Control strain plate B 5 Sample ATCC Engineered strain YP
19 Control strain plate B 6 Empty Empty Empty Empty None
20 Control strain plate B 7 Sample USDA Lab strain AFEX
21 Control strain plate B 8 Sample USDA Wild strain AFEX
22 Control strain plate B 9 Sample Internal source Industrial strain AFEX
23 Control strain plate B 10 Sample ATCC Engineered strain AFEX
24 Control strain plate B 11 Empty Empty Empty Empty None
25 Control strain plate B 12 Empty Empty Empty Empty None
26 Control strain plate C 1 Empty Empty Empty Empty None
27 Control strain plate C 2 Sample USDA Lab strain YP+0.25% glucose
28 Control strain plate C 3 Sample USDA Wild strain YP+0.25% glucose
29 Control strain plate C 4 Sample Internal source Industrial strain YP+0.25% glucose
30 Control strain plate C 5 Sample ATCC Engineered strain YP+0.25% glucose
31 Control strain plate C 6 Empty Empty Empty Empty Empty
32 Control strain plate C 7 Sample USDA Lab strain AFEX+0.25% glucose
33 Control strain plate C 8 Sample USDA Wild strain AFEX+0.25% glucose
34 Control strain plate C 9 Sample Internal source Industrial strain AFEX+0.25% glucose
35 Control strain plate C 10 Sample ATCC Engineered strain AFEX+0.25% glucose
36 Control strain plate C 11 Empty Empty Empty Empty None
37 Control strain plate C 12 Empty Empty Empty Empty None
38 Control strain plate D 1 Empty Empty Empty Empty None
39 Control strain plate D 2 Sample USDA Lab strain YP+0.5% glucose
40 Control strain plate D 3 Sample USDA Wild strain YP+0.5% glucose
41 Control strain plate D 4 Sample Internal source Industrial strain YP+0.5% glucose
42 Control strain plate D 5 Sample ATCC Engineered strain YP+0.5% glucose
43 Control strain plate D 6 Empty Empty Empty Empty Empty
44 Control strain plate D 7 Sample USDA Lab strain AFEX+0.5% glucose
45 Control strain plate D 8 Sample USDA Wild strain AFEX+0.5% glucose
46 Control strain plate D 9 Sample Internal source Industrial strain AFEX+0.5% glucose
47 Control strain plate D 10 Sample ATCC Engineered strain AFEX+0.5% glucose
48 Control strain plate D 11 Empty Empty Empty Empty None
49 Control strain plate D 12 Empty Empty Empty Empty None
50 Control strain plate E 1 Empty Empty Empty Empty None
51 Control strain plate E 2 Sample USDA Lab strain YP+1% glucose
52 Control strain plate E 3 Sample USDA Wild strain YP+1% glucose
53 Control strain plate E 4 Sample Internal source Industrial strain YP+1% glucose
54 Control strain plate E 5 Sample ATCC Engineered strain YP+1% glucose
55 Control strain plate E 6 Empty Empty Empty Empty Empty
56 Control strain plate E 7 Sample USDA Lab strain AFEX+1% glucose
57 Control strain plate E 8 Sample USDA Wild strain AFEX+1% glucose
58 Control strain plate E 9 Sample Internal source Industrial strain AFEX+1% glucose
59 Control strain plate E 10 Sample ATCC Engineered strain AFEX+1% glucose
60 Control strain plate E 11 Empty Empty Empty Empty None
61 Control strain plate E 12 Empty Empty Empty Empty None
62 Control strain plate F 1 Empty Empty Empty Empty None
63 Control strain plate F 2 Sample USDA Lab strain YP+2% glucose
64 Control strain plate F 3 Sample USDA Wild strain YP+2% glucose
65 Control strain plate F 4 Sample Internal source Industrial strain YP+2% glucose
66 Control strain plate F 5 Sample ATCC Engineered strain YP+2% glucose
67 Control strain plate F 6 Empty Empty Empty Empty Empty
68 Control strain plate F 7 Sample USDA Lab strain AFEX+2% glucose
69 Control strain plate F 8 Sample USDA Wild strain AFEX+2% glucose
70 Control strain plate F 9 Sample Internal source Industrial strain AFEX+2% glucose
71 Control strain plate F 10 Sample ATCC Engineered strain AFEX+2% glucose
72 Control strain plate F 11 Empty Empty Empty Empty None
73 Control strain plate F 12 Empty Empty Empty Empty None
74 Control strain plate G 1 Empty Empty Empty Empty None
75 Control strain plate G 2 Sample USDA Lab strain YP+5% glucose
76 Control strain plate G 3 Sample USDA Wild strain YP+5% glucose
77 Control strain plate G 4 Sample Internal source Industrial strain YP+5% glucose
78 Control strain plate G 5 Sample ATCC Engineered strain YP+5% glucose
79 Control strain plate G 6 Empty Empty Empty Empty Empty
80 Control strain plate G 7 Sample USDA Lab strain AFEX+5% glucose
81 Control strain plate G 8 Sample USDA Wild strain AFEX+5% glucose
82 Control strain plate G 9 Sample Internal source Industrial strain AFEX+5% glucose
83 Control strain plate G 10 Sample ATCC Engineered strain AFEX+5% glucose
84 Control strain plate G 11 Empty Empty Empty Empty None
85 Control strain plate G 12 Empty Empty Empty Empty None
86 Control strain plate H 1 Empty Empty Empty Empty None
87 Control strain plate H 2 Empty Empty Empty Empty None
88 Control strain plate H 3 Empty Empty Empty Empty None
89 Control strain plate H 4 Empty Empty Empty Empty None
90 Control strain plate H 5 Empty Empty Empty Empty None
91 Control strain plate H 6 Empty Empty Empty Empty None
92 Control strain plate H 7 Empty Empty Empty Empty None
93 Control strain plate H 8 Empty Empty Empty Empty None
94 Control strain plate H 9 Empty Empty Empty Empty None
95 Control strain plate H 10 Empty Empty Empty Empty None
96 Control strain plate H 11 Empty Empty Empty Empty None
97 Control strain plate H 12 Empty Empty Empty Empty None
Rails/public/resources/test_YYYY_MM_DD_HH_MM_SS.csv
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# See http://www.robotstxt.org/wc/norobots.html for documentation on how to use the robots.txt file
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Rails/public/uploadedFiles/20150407-1428438865/YPDAFEXglucoseTests_2-25-10.csv
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Rails/public/uploadedFiles/20150407-1428438865/YPDAFEXglucoseTests_2-25-10_Layout.csv
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Destination plate name,Row,Column,Well ID,Plate source,Well Source,Strain,Media Definition
Control strain plate,A,1,Empty,Empty,Empty,Empty,None
Control strain plate,A,2,Empty,Empty,Empty,Empty,None
Control strain plate,A,3,Empty,Empty,Empty,Empty,None
Control strain plate,A,4,Empty,Empty,Empty,Empty,None
Control strain plate,A,5,Empty,Empty,Empty,Empty,None
Control strain plate,A,6,Empty,Empty,Empty,Empty,None
Control strain plate,A,7,Empty,Empty,Empty,Empty,None
Control strain plate,A,8,Empty,Empty,Empty,Empty,None
Control strain plate,A,9,Empty,Empty,Empty,Empty,None
Control strain plate,A,10,Empty,Empty,Empty,Empty,None
Control strain plate,A,11,Empty,Empty,Empty,Empty,None
Control strain plate,A,12,Empty,Empty,Empty,Empty,None
Control strain plate,B,1,Empty,Empty,Empty,Empty,None
Control strain plate,B,2,Sample,USDA,,Lab strain,YP
Control strain plate,B,3,Sample,USDA,,Wild strain,YP
Control strain plate,B,4,Sample,Internal source,,Industrial strain,YP
Control strain plate,B,5,Sample,ATCC,,Engineered strain,YP
Control strain plate,B,6,Empty,Empty,Empty,Empty,None
Control strain plate,B,7,Sample,USDA,,Lab strain,AFEX
Control strain plate,B,8,Sample,USDA,,Wild strain,AFEX
Control strain plate,B,9,Sample,Internal source,,Industrial strain,AFEX
Control strain plate,B,10,Sample,ATCC,,Engineered strain,AFEX
Control strain plate,B,11,Empty,Empty,Empty,Empty,None
Control strain plate,B,12,Empty,Empty,Empty,Empty,None
Control strain plate,C,1,Empty,Empty,Empty,Empty,None
Control strain plate,C,2,Sample,USDA,,Lab strain,YP+0.25% glucose
Control strain plate,C,3,Sample,USDA,,Wild strain,YP+0.25% glucose
Control strain plate,C,4,Sample,Internal source,,Industrial strain,YP+0.25% glucose
Control strain plate,C,5,Sample,ATCC,,Engineered strain,YP+0.25% glucose
Control strain plate,C,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,C,7,Sample,USDA,,Lab strain,AFEX+0.25% glucose
Control strain plate,C,8,Sample,USDA,,Wild strain,AFEX+0.25% glucose
Control strain plate,C,9,Sample,Internal source,,Industrial strain,AFEX+0.25% glucose
Control strain plate,C,10,Sample,ATCC,,Engineered strain,AFEX+0.25% glucose
Control strain plate,C,11,Empty,Empty,Empty,Empty,None
Control strain plate,C,12,Empty,Empty,Empty,Empty,None
Control strain plate,D,1,Empty,Empty,Empty,Empty,None
Control strain plate,D,2,Sample,USDA,,Lab strain,YP+0.5% glucose
Control strain plate,D,3,Sample,USDA,,Wild strain,YP+0.5% glucose
Control strain plate,D,4,Sample,Internal source,,Industrial strain,YP+0.5% glucose
Control strain plate,D,5,Sample,ATCC,,Engineered strain,YP+0.5% glucose
Control strain plate,D,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,D,7,Sample,USDA,,Lab strain,AFEX+0.5% glucose
Control strain plate,D,8,Sample,USDA,,Wild strain,AFEX+0.5% glucose
Control strain plate,D,9,Sample,Internal source,,Industrial strain,AFEX+0.5% glucose
Control strain plate,D,10,Sample,ATCC,,Engineered strain,AFEX+0.5% glucose
Control strain plate,D,11,Empty,Empty,Empty,Empty,None
Control strain plate,D,12,Empty,Empty,Empty,Empty,None
Control strain plate,E,1,Empty,Empty,Empty,Empty,None
Control strain plate,E,2,Sample,USDA,,Lab strain,YP+1% glucose
Control strain plate,E,3,Sample,USDA,,Wild strain,YP+1% glucose
Control strain plate,E,4,Sample,Internal source,,Industrial strain,YP+1% glucose
Control strain plate,E,5,Sample,ATCC,,Engineered strain,YP+1% glucose
Control strain plate,E,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,E,7,Sample,USDA,,Lab strain,AFEX+1% glucose
Control strain plate,E,8,Sample,USDA,,Wild strain,AFEX+1% glucose
Control strain plate,E,9,Sample,Internal source,,Industrial strain,AFEX+1% glucose
Control strain plate,E,10,Sample,ATCC,,Engineered strain,AFEX+1% glucose
Control strain plate,E,11,Empty,Empty,Empty,Empty,None
Control strain plate,E,12,Empty,Empty,Empty,Empty,None
Control strain plate,F,1,Empty,Empty,Empty,Empty,None
Control strain plate,F,2,Sample,USDA,,Lab strain,YP+2% glucose
Control strain plate,F,3,Sample,USDA,,Wild strain,YP+2% glucose
Control strain plate,F,4,Sample,Internal source,,Industrial strain,YP+2% glucose
Control strain plate,F,5,Sample,ATCC,,Engineered strain,YP+2% glucose
Control strain plate,F,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,F,7,Sample,USDA,,Lab strain,AFEX+2% glucose
Control strain plate,F,8,Sample,USDA,,Wild strain,AFEX+2% glucose
Control strain plate,F,9,Sample,Internal source,,Industrial strain,AFEX+2% glucose
Control strain plate,F,10,Sample,ATCC,,Engineered strain,AFEX+2% glucose
Control strain plate,F,11,Empty,Empty,Empty,Empty,None
Control strain plate,F,12,Empty,Empty,Empty,Empty,None
Control strain plate,G,1,Empty,Empty,Empty,Empty,None
Control strain plate,G,2,Sample,USDA,,Lab strain,YP+5% glucose
Control strain plate,G,3,Sample,USDA,,Wild strain,YP+5% glucose
Control strain plate,G,4,Sample,Internal source,,Industrial strain,YP+5% glucose
Control strain plate,G,5,Sample,ATCC,,Engineered strain,YP+5% glucose
Control strain plate,G,6,Empty,Empty,Empty,Empty,Empty
Control strain plate,G,7,Sample,USDA,,Lab strain,AFEX+5% glucose
Control strain plate,G,8,Sample,USDA,,Wild strain,AFEX+5% glucose
Control strain plate,G,9,Sample,Internal source,,Industrial strain,AFEX+5% glucose
Control strain plate,G,10,Sample,ATCC,,Engineered strain,AFEX+5% glucose
Control strain plate,G,11,Empty,Empty,Empty,Empty,None
Control strain plate,G,12,Empty,Empty,Empty,Empty,None
Control strain plate,H,1,Empty,Empty,Empty,Empty,None
Control strain plate,H,2,Empty,Empty,Empty,Empty,None
Control strain plate,H,3,Empty,Empty,Empty,Empty,None
Control strain plate,H,4,Empty,Empty,Empty,Empty,None
Control strain plate,H,5,Empty,Empty,Empty,Empty,None
Control strain plate,H,6,Empty,Empty,Empty,Empty,None
Control strain plate,H,7,Empty,Empty,Empty,Empty,None
Control strain plate,H,8,Empty,Empty,Empty,Empty,None
Control strain plate,H,9,Empty,Empty,Empty,Empty,None
Control strain plate,H,10,Empty,Empty,Empty,Empty,None
Control strain plate,H,11,Empty,Empty,Empty,Empty,None
Control strain plate,H,12,Empty,Empty,Empty,Empty,None
1 Destination plate name Row Column Well ID Plate source Well Source Strain Media Definition
2 Control strain plate A 1 Empty Empty Empty Empty None
3 Control strain plate A 2 Empty Empty Empty Empty None
4 Control strain plate A 3 Empty Empty Empty Empty None
5 Control strain plate A 4 Empty Empty Empty Empty None
6 Control strain plate A 5 Empty Empty Empty Empty None
7 Control strain plate A 6 Empty Empty Empty Empty None
8 Control strain plate A 7 Empty Empty Empty Empty None
9 Control strain plate A 8 Empty Empty Empty Empty None
10 Control strain plate A 9 Empty Empty Empty Empty None
11 Control strain plate A 10 Empty Empty Empty Empty None
12 Control strain plate A 11 Empty Empty Empty Empty None
13 Control strain plate A 12 Empty Empty Empty Empty None
14 Control strain plate B 1 Empty Empty Empty Empty None
15 Control strain plate B 2 Sample USDA Lab strain YP
16 Control strain plate B 3 Sample USDA Wild strain YP
17 Control strain plate B 4 Sample Internal source Industrial strain YP
18 Control strain plate B 5 Sample ATCC Engineered strain YP
19 Control strain plate B 6 Empty Empty Empty Empty None
20 Control strain plate B 7 Sample USDA Lab strain AFEX
21 Control strain plate B 8 Sample USDA Wild strain AFEX
22 Control strain plate B 9 Sample Internal source Industrial strain AFEX
23 Control strain plate B 10 Sample ATCC Engineered strain AFEX
24 Control strain plate B 11 Empty Empty Empty Empty None
25 Control strain plate B 12 Empty Empty Empty Empty None
26 Control strain plate C 1 Empty Empty Empty Empty None
27 Control strain plate C 2 Sample USDA Lab strain YP+0.25% glucose
28 Control strain plate C 3 Sample USDA Wild strain YP+0.25% glucose
29 Control strain plate C 4 Sample Internal source Industrial strain YP+0.25% glucose
30 Control strain plate C 5 Sample ATCC Engineered strain YP+0.25% glucose
31 Control strain plate C 6 Empty Empty Empty Empty Empty
32 Control strain plate C 7 Sample USDA Lab strain AFEX+0.25% glucose
33 Control strain plate C 8 Sample USDA Wild strain AFEX+0.25% glucose
34 Control strain plate C 9 Sample Internal source Industrial strain AFEX+0.25% glucose
35 Control strain plate C 10 Sample ATCC Engineered strain AFEX+0.25% glucose
36 Control strain plate C 11 Empty Empty Empty Empty None
37 Control strain plate C 12 Empty Empty Empty Empty None
38 Control strain plate D 1 Empty Empty Empty Empty None
39 Control strain plate D 2 Sample USDA Lab strain YP+0.5% glucose
40 Control strain plate D 3 Sample USDA Wild strain YP+0.5% glucose
41 Control strain plate D 4 Sample Internal source Industrial strain YP+0.5% glucose
42 Control strain plate D 5 Sample ATCC Engineered strain YP+0.5% glucose
43 Control strain plate D 6 Empty Empty Empty Empty Empty
44 Control strain plate D 7 Sample USDA Lab strain AFEX+0.5% glucose
45 Control strain plate D 8 Sample USDA Wild strain AFEX+0.5% glucose
46 Control strain plate D 9 Sample Internal source Industrial strain AFEX+0.5% glucose
47 Control strain plate D 10 Sample ATCC Engineered strain AFEX+0.5% glucose
48 Control strain plate D 11 Empty Empty Empty Empty None
49 Control strain plate D 12 Empty Empty Empty Empty None
50 Control strain plate E 1 Empty Empty Empty Empty None
51 Control strain plate E 2 Sample USDA Lab strain YP+1% glucose
52 Control strain plate E 3 Sample USDA Wild strain YP+1% glucose
53 Control strain plate E 4 Sample Internal source Industrial strain YP+1% glucose
54 Control strain plate E 5 Sample ATCC Engineered strain YP+1% glucose
55 Control strain plate E 6 Empty Empty Empty Empty Empty
56 Control strain plate E 7 Sample USDA Lab strain AFEX+1% glucose
57 Control strain plate E 8 Sample USDA Wild strain AFEX+1% glucose
58 Control strain plate E 9 Sample Internal source Industrial strain AFEX+1% glucose
59 Control strain plate E 10 Sample ATCC Engineered strain AFEX+1% glucose
60 Control strain plate E 11 Empty Empty Empty Empty None
61 Control strain plate E 12 Empty Empty Empty Empty None
62 Control strain plate F 1 Empty Empty Empty Empty None
63 Control strain plate F 2 Sample USDA Lab strain YP+2% glucose
64 Control strain plate F 3 Sample USDA Wild strain YP+2% glucose
65 Control strain plate F 4 Sample Internal source Industrial strain YP+2% glucose
66 Control strain plate F 5 Sample ATCC Engineered strain YP+2% glucose
67 Control strain plate F 6 Empty Empty Empty Empty Empty
68 Control strain plate F 7 Sample USDA Lab strain AFEX+2% glucose
69 Control strain plate F 8 Sample USDA Wild strain AFEX+2% glucose
70 Control strain plate F 9 Sample Internal source Industrial strain AFEX+2% glucose
71 Control strain plate F 10 Sample ATCC Engineered strain AFEX+2% glucose
72 Control strain plate F 11 Empty Empty Empty Empty None
73 Control strain plate F 12 Empty Empty Empty Empty None
74 Control strain plate G 1 Empty Empty Empty Empty None
75 Control strain plate G 2 Sample USDA Lab strain YP+5% glucose
76 Control strain plate G 3 Sample USDA Wild strain YP+5% glucose
77 Control strain plate G 4 Sample Internal source Industrial strain YP+5% glucose
78 Control strain plate G 5 Sample ATCC Engineered strain YP+5% glucose
79 Control strain plate G 6 Empty Empty Empty Empty Empty
80 Control strain plate G 7 Sample USDA Lab strain AFEX+5% glucose
81 Control strain plate G 8 Sample USDA Wild strain AFEX+5% glucose
82 Control strain plate G 9 Sample Internal source Industrial strain AFEX+5% glucose
83 Control strain plate G 10 Sample ATCC Engineered strain AFEX+5% glucose
84 Control strain plate G 11 Empty Empty Empty Empty None
85 Control strain plate G 12 Empty Empty Empty Empty None
86 Control strain plate H 1 Empty Empty Empty Empty None
87 Control strain plate H 2 Empty Empty Empty Empty None
88 Control strain plate H 3 Empty Empty Empty Empty None
89 Control strain plate H 4 Empty Empty Empty Empty None
90 Control strain plate H 5 Empty Empty Empty Empty None
91 Control strain plate H 6 Empty Empty Empty Empty None
92 Control strain plate H 7 Empty Empty Empty Empty None
93 Control strain plate H 8 Empty Empty Empty Empty None
94 Control strain plate H 9 Empty Empty Empty Empty None
95 Control strain plate H 10 Empty Empty Empty Empty None
96 Control strain plate H 11 Empty Empty Empty Empty None
97 Control strain plate H 12 Empty Empty Empty Empty None