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GCAT5.0 released

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2015-04-10 15:12:45 -05:00
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Rails/public/generatedFiles/20150407-1428438865/YPDAFEXglucoseTests_2-25-10_achieved_growth.pdf
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Rails/public/generatedFiles/20150407-1428438865/output_gcat.fit_2015-04-07_15.34.27.txt
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"row" "plate" "well" "media" "strain" "model" "lag.time, hrs" "lag.time.SE, hrs" "inflection.time, hrs" "max.spec.growth.rate, log.OD/hr" "max.spec.growth.rate.SE, log.OD/hr" "baseline, log.OD" "baseline.SE, log.OD" "amplitude, log.OD" "amplitude.SE, log.OD" "plateau, log.OD" "inoc.log.OD" "max.log.OD" "projected.growth, log.OD" "achieved.growth, log.OD" "baseline.OD" "amplitude.OD" "plateau.OD" "inoc.OD" "max.OD" "projected.growth.OD" "achieved.growth.OD" "shape.par" "shape.par.SE" "R.squared" "RSS" "empty" "asymp.not.reached" "tank" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "gompertz sigmoid" 0 1.75346931682115 9.008895 0.00387129154161333 0.000169526575673485 0.106012627582768 0.00533332981254499 0.0949774510885174 0.0112054786798504 0.200990078671286 0.112280003029694 0.184252861643961 0.0887100756415918 0.0719728586142672 0.111835916217944 0.0996340592954781 0.222612641821245 0.118826091485523 0.202319805224487 0.103786550335722 0.0834937137389644 NA NA 0.955970181896242 0.00271004795972447 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards sigmoid" 2.40987768343735 0.0533048366613944 4.21845083333333 0.0460029603516824 0.000724536080633502 0.0730406465985917 0.00147448206809288 0.20195449827016 0.00148223339842928 0.274995144868751 0.073266311037202 0.274994924460913 0.201728833831549 0.201728613423711 0.0757742625906743 0.22379232217684 0.316524282953919 0.0760170539793741 0.31652399278168 0.240507228974545 0.240506938802306 0.265875936579388 0.100708043886741 0.997917404710374 0.00135388203716233 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "logistic sigmoid." 3.07823403673893 0.0432348209213164 5.3624375 0.0732442091237218 0.00083385044900585 0.0859165104025432 0.00136428289761777 0.336085729465356 0.00149532007847134 0.4220022398679 0.0889960026247708 0.422002205393214 0.333006237243129 0.333006202768443 0.0897153446116215 0.399458994539777 0.525011940504746 0.0930762868815243 0.52501188793044 0.431935653623222 0.431935601048915 NA NA 0.99892015420286 0.00211931922664724 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards sigmoid" 3.31104934964427 0.0428738829656516 6.24426055555555 0.087498859778052 0.000646229427574331 0.0670789160536515 0.00264084512090784 0.496808437832399 0.00261152544308038 0.56388735388605 0.0759549213884333 0.563886450845895 0.487932432497617 0.487931529457461 0.0693798660836618 0.643467662335959 0.757491228661656 0.0789139371187617 0.75748964157722 0.678577291542894 0.678575704458458 1.22323321021831 0.0913419736269564 0.999523017751576 0.00210815425649153 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "richards sigmoid" 3.16160945641398 0.0130132752242264 5.69610027777778 0.0871403267354909 0.000229646786119097 0.08737718548213 0.000697693868328928 0.569725537718312 0.000706582348719082 0.657102723200442 0.0877050574005534 0.656913955188774 0.569397665799888 0.56920889778822 0.0913082277184576 0.767781795419447 0.92919481815215 0.0916660957048965 0.928830682251893 0.837528722447253 0.837164586546997 0.128377244056841 0.0158490082737876 0.999930578411107 0.000418173571721894 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "gompertz sigmoid" 1.97362812374979 0.160218470960237 6.10126222222222 0.0637129438472813 0.000882845743042059 0.0636642130548074 0.00677504517335327 0.715651375940815 0.00877835119047133 0.779315588995622 0.0726054464623438 0.769574985282588 0.706710142533278 0.696969538820244 0.0657344789473957 1.0455186500407 1.17997975267831 0.0753061873456158 1.15884851638065 1.10467356533269 1.08354232903504 NA NA 0.996368548540555 0.0284187363816137 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "gompertz sigmoid" 0 6.85707287937896 22.1409086111111 0.00240032503165892 0.000622808682835668 0.183471250816661 0.0241038377523601 0.144528358183154 0.243574028025108 0.327999608999814 0.193008393297115 0.240674524494353 0.134991215702699 0.0476661311972385 0.201380426209075 0.155494462222733 0.388188429507373 0.212892973647493 0.27210692827532 0.175295455859879 0.0592139546278265 NA NA 0.790451631963756 0.00713078905920281 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "gompertz sigmoid" 1.9906115468579 0.0691975318131243 3.47962611111111 0.0490374116952237 0.00113344212179788 0.113611335614137 0.00175358527026848 0.199753898562767 0.00189317967250483 0.313365234176905 0.113618321003616 0.313364980275983 0.199746913173288 0.199746659272367 0.120316613087275 0.221102206170602 0.368021087850449 0.120324438962491 0.368020740508678 0.247696648887958 0.247696301546187 NA NA 0.99399012987845 0.00350258662967115 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "logistic sigmoid." 2.74248926201157 0.0354379553926203 4.43294833333333 0.0945867701955495 0.00125702159577835 0.120482088801679 0.00134117834599991 0.32177887516419 0.00144348747790325 0.442260963965869 0.122204770404787 0.442260963925467 0.320056193561082 0.32005619352068 0.12804053622706 0.379579682895796 0.556221805261732 0.129985465672481 0.556221805198858 0.426236339589251 0.426236339526377 NA NA 0.998757902847438 0.00205103195615211 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards sigmoid" 3.06558696223571 0.0312092193543957 5.3624375 0.121127558311403 0.000999219504341884 0.0914412547332416 0.00245736106561066 0.492484364444972 0.00245078801862176 0.583925619178214 0.10090202921227 0.583925619102095 0.483023589965944 0.483023589889825 0.0957524045344744 0.636376529891633 0.793063517352536 0.106168264278383 0.79306351721605 0.686895253074153 0.686895252937667 1.80996092627302 0.117497603933281 0.999544726321195 0.00181967924857191 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards sigmoid" 2.77641833187198 0.0527034516734386 5.62460111111111 0.129882570160111 0.00113584996869085 0.0943645434950579 0.00505890911787811 0.678399507081888 0.00501032007418759 0.772764050576946 0.11484805727615 0.77276399934955 0.657915993300795 0.657915942073399 0.0989602917302299 0.97072108167106 1.16574421483214 0.12170299001548 1.16574410388671 1.04404122481666 1.04404111387123 1.58781592816572 0.131684393376964 0.999371589849352 0.00464022682166854 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards sigmoid" 2.62155170729439 0.0528519100950448 5.64843416666667 0.120898389355078 0.000856667358787892 0.106939412411106 0.00473823154418831 0.792250602933212 0.00464150376049532 0.899190015344318 0.119165060839678 0.899150109300876 0.78002495450464 0.779985048461198 0.112866826518918 1.20836098124136 1.45761167700228 0.126555853197717 1.45751360540077 1.33105582380456 1.33095775220305 0.651987010079984 0.0715475157170284 0.999508942394936 0.00516491712891745 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "gompertz sigmoid" 0 5.0780526120225 14.0138366666667 0.00262196611873332 0.00018437938744914 0.128373333313586 0.0113746241547247 0.0999846427550281 0.0508218894501574 0.228357976068614 0.134971123503685 0.189191289569101 0.0933868525649285 0.0542201660654161 0.136977395010588 0.105153945825447 0.256535054410289 0.144503734616262 0.208272060219704 0.112031319794027 0.0637683256034425 NA NA 0.855383080839261 0.00575026814686199 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "gompertz sigmoid" 0.891438154862617 0.0875315924591966 2.31180638888889 0.0535113235044828 0.00124573544664028 0.0881434958395649 0.00304307272545713 0.207061853609148 0.00316468246722843 0.295205349448713 0.0894254262692569 0.295205293059733 0.205779923179456 0.205779866790477 0.0921448290236948 0.230058652994932 0.343402197264266 0.0935457804829503 0.343402121511189 0.249856416781316 0.249856341028238 NA NA 0.991724253334924 0.00363563892033091 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic sigmoid." 1.64713494830746 0.0412877829637357 3.38429388888889 0.0931935829835479 0.00118142556806869 0.0808528949077067 0.00187894210009506 0.326765480130978 0.00196420648303134 0.407618375038685 0.0874704775763749 0.407618375014084 0.32014789746231 0.320147897437709 0.0842113918182088 0.386476282813275 0.503233380311918 0.0914100428976898 0.503233380274936 0.411823337414228 0.411823337377247 NA NA 0.998561073647885 0.00184537988196709 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards sigmoid" 2.00035124383545 0.0281455446975304 4.31378305555555 0.124952394681256 0.000705710849322313 0.066176309959304 0.00266242484922488 0.497003217300128 0.00264805311701161 0.563179527259432 0.0884800685969233 0.563179527257016 0.474699458662509 0.474699458660092 0.0684150727790216 0.643787807270277 0.756247669737942 0.0925124770869246 0.756247669733698 0.663735192651017 0.663735192646773 2.09745464546466 0.104168274133155 0.999771040591133 0.00072098110255013 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards sigmoid" 2.0490071997567 0.0662248504953823 4.76661111111111 0.13306744704186 0.00129515567791922 0.0751622402050358 0.00684502394093866 0.656973009903259 0.00678618652478681 0.732135250108295 0.103854790297524 0.732135243114114 0.628280459810771 0.62828045281659 0.0780590412170139 0.92894459216055 1.07951615758535 0.10943934186153 1.07951614304083 0.970076815723817 0.970076801179305 1.62672197615846 0.161151121349594 0.999229593966034 0.00459582695233057 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "logistic sigmoid." 1.98629177172554 0.0661342221284037 5.19560611111111 0.122957280170312 0.00117607964263019 0.0764858915144976 0.00452433442917892 0.793858352641992 0.00487921879564307 0.870344244156489 0.106676773149917 0.870336478987225 0.763667471006573 0.763659705837308 0.0794869603035999 1.21191432864705 1.38773267508318 0.112574582376872 1.38771413400679 1.27515809270631 1.27513955162992 NA NA 0.998885750680602 0.0103824045406066 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "gompertz sigmoid" 0 3.37960900118466 11.4875327777778 0.00260114799703032 0.000171113335294184 0.0996380871643661 0.00702344449132755 0.0812678741827026 0.0218737314876996 0.180905961347069 0.105000794559007 0.157379078978817 0.075905166788062 0.0523782844198106 0.104771014904237 0.084661410443271 0.198302487242874 0.110711492881175 0.17043921871877 0.0875909943616988 0.0597277258375952 NA NA 0.906033844889994 0.00328284811832938 "I " "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "gompertz sigmoid" 0.983948183597175 0.112859786286644 2.47863777777778 0.0501739409645355 0.00144200881080694 0.0661469359457048 0.00364271202623762 0.205919623922245 0.00380546132645363 0.27206655986795 0.0672650583629558 0.272066410063879 0.204801501504994 0.204801351700923 0.0683836896010714 0.228654445601205 0.312674369836174 0.0695789414490573 0.312674173192226 0.243095428387117 0.243095231743168 NA NA 0.987488271024703 0.00577672548033825 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "richards sigmoid" 1.86398050594022 0.0558531581780885 3.55112527777778 0.0944346403793218 0.00150539518734246 0.0602064687184575 0.00349724664000438 0.368213525552587 0.00348116438514935 0.428419994271045 0.0619674090584591 0.428419978577839 0.366452585212586 0.36645256951938 0.0620558052105851 0.445150582608455 0.534830565662769 0.0639276697585029 0.534830541576357 0.470902895904266 0.470902871817855 0.41241007480043 0.120556305314198 0.997911612798025 0.00385752298874987 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "logistic sigmoid." 1.99006793380884 0.0351079474960275 4.12311861111111 0.121142575431043 0.00106707303416645 0.0644342397186312 0.00208740714872881 0.517632133522502 0.00221049055518603 0.582066373241133 0.0750837822538967 0.582066368203544 0.506982590987236 0.506982585949648 0.0665554389527234 0.678049544482632 0.789732868500092 0.0779744622314236 0.789732859484154 0.711758406268668 0.71175839725273 NA NA 0.999269039916925 0.00268951955610802 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "logistic sigmoid." 1.98431414913883 0.0344438902457988 4.48061444444444 0.130673511563394 0.000910297701821604 0.0736708018228489 0.00232986507621017 0.655420765541249 0.00247952515524191 0.729091567364097 0.0914028197402174 0.729091436186734 0.63768874762388 0.637688616446517 0.0764523809998565 0.925952721450692 1.07319639269875 0.0957102901077889 1.07319612074233 0.977486102590961 0.977485830634544 NA NA 0.999493885845309 0.00307265449990923 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "logistic sigmoid." 2.10388607358557 0.0485609580954195 5.24327222222222 0.128060724388346 0.000947720103104396 0.0637480626845324 0.00338335491744478 0.806179689301617 0.00365527295985513 0.869927751986149 0.0914242899462062 0.869921741898693 0.778503462039943 0.778497451952487 0.0658238441354071 1.23933666273098 1.38673841018529 0.0957338154859682 1.38672406572182 1.29100459469932 1.29099025023585 NA NA 0.999357534856407 0.00631075803154068 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "logistic sigmoid." 9.73707675795057 0.0985970533305578 14.6811622222222 0.0827678159518767 0.00119202041574655 -0.000880352187845948 0.00297599235664884 0.821196181140969 0.00723578634320824 0.820315828953123 0.00130662738981984 0.80016942429868 0.819009201563303 0.79886279690886 -0.000879964791548726 1.27321739163809 1.27121704036991 0.00130748139930459 1.22591802114689 1.2699095589706 1.22461053974758 NA NA 0.997343483064722 0.0337108649740508 "E*" "L" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards sigmoid" 3.77043529293613 0.0360628422979525 7.69807694444444 0.0922143076373947 0.000396448194603239 0.0415079420521979 0.00249398077489825 0.670137254883342 0.00244318042181785 0.71164519693554 0.0610249599211764 0.711620409573069 0.650620237014363 0.650595449651893 0.0423814404664091 0.954505567660092 1.03734032901714 0.0629254443914062 1.03728982934981 0.974414884625737 0.974364384958405 1.49636190326278 0.0645036016880811 0.999821079386736 0.00149128792010239 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards sigmoid" 3.81401380371595 0.0414172658123116 7.84107527777778 0.0912912497086539 0.000430847222656137 0.0416798125769253 0.00284816947390064 0.69143284133484 0.00278081561682767 0.733112653911766 0.0607785098125833 0.73305639362929 0.672334144099182 0.672277883816707 0.0425606105081318 0.996574258830031 1.08154967821066 0.0626635185773581 1.08143257293199 1.0188861596333 1.01876905435464 1.38211643616927 0.068441420394402 0.999776277423773 0.00199878407126496 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards sigmoid" 4.10969518183839 0.0412228717219101 8.43690166666667 0.0887040084623295 0.000394405492929288 0.0340862871852733 0.00276975733383969 0.70953425876434 0.00269646137747281 0.743620545949613 0.0553702983243347 0.743521928280257 0.688250247625278 0.688151629955922 0.034673881973359 1.03304416561189 1.10353769905694 0.0569319223405151 1.10333026330024 1.04660577671642 1.04639834095972 1.51337755174144 0.0684110305817092 0.999797902728699 0.00192728932795894 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards sigmoid" 4.24887937601734 0.0432115785663927 8.81823055555555 0.0859527181410838 0.000375029672246797 0.0356447291331235 0.00283858611378653 0.730548134285546 0.00274599564832944 0.766192863418669 0.0570847529310588 0.765947841016383 0.70910811048761 0.708863088085324 0.0362876182839384 1.07621834228765 1.15155936096669 0.0587455383807147 1.15103224530362 1.09281382258598 1.0922867069229 1.43679372443259 0.0664148620205159 0.999795584571703 0.00207184898977108 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards sigmoid" 4.18007396642371 0.0466407733724283 8.81823055555555 0.0839684559025767 0.000369760007946289 0.0335662062693272 0.00302321134929714 0.761208314991861 0.00289043066835203 0.794774521261188 0.0523578984758354 0.794000059559319 0.742416622785352 0.741642161083483 0.0341359077403089 1.14086149330819 1.21394174372853 0.0537528115582857 1.21222779441756 1.16018893217025 1.15847498285928 1.13197498623035 0.0608907037432053 0.999775581271097 0.00245341232352351 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards sigmoid" 4.31631141456833 0.0375067738225389 9.10422722222222 0.0746869165814573 0.000251011212616688 0.0449034082917984 0.00217539454600581 0.811374096629365 0.0020199781451565 0.856277504921164 0.0531730581528585 0.847610694845515 0.803104446768305 0.794437636692656 0.0459268271704429 1.25099895262068 1.35438019247854 0.0546121385565925 1.33406339459093 1.29976805392195 1.27945125603434 0.475355275365838 0.0354989182491613 0.99984356158066 0.00187490302158927 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards sigmoid" 2.71231721101246 0.051377222191618 6.24426055555555 0.114869798087755 0.000679522317637316 0.0686814145642472 0.00460568272264885 0.729956501290573 0.00454362062059059 0.798637915854821 0.10099640348141 0.798636815214796 0.697641512373411 0.697640411733386 0.0710949195446084 1.07499034630887 1.22251161803554 0.10627266302607 1.22250917185165 1.11623895500947 1.11623650882558 1.70292251675116 0.10179548101048 0.999686879664103 0.00266681050440312 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards sigmoid" 3.01070188606209 0.0455540510180634 6.55409027777778 0.115107998074341 0.000641488536342826 0.0614813761638786 0.00401667627257402 0.743382938801471 0.00395687893333818 0.804864314965349 0.0885306662587629 0.804861736607772 0.716333648706586 0.716331070349009 0.0634106915579287 1.10303794283843 1.23639303316638 0.0925677570623027 1.23638726695289 1.14382527610408 1.14381950989059 1.57881072796814 0.0887320125722592 0.999717695034928 0.00263054987530885 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards sigmoid" 2.97864249972838 0.0440943285573364 6.55409027777778 0.114576828102917 0.000592514268492699 0.0574375614416587 0.0038875686917152 0.760494448227834 0.00382450823238821 0.817932009669493 0.0846335570605372 0.817926981908608 0.733298452608956 0.733293424848071 0.059119138718029 1.13933374880962 1.26580931746965 0.0883181871040035 1.26579792555084 1.17749113036565 1.17747973844683 1.48473851369249 0.0802727796034772 0.999751240782926 0.00242858216652038 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards sigmoid" 2.92985461453388 0.0457749726886301 6.57792333333333 0.113561152688866 0.000574978160263558 0.060472124586291 0.00402516587449496 0.782067831893148 0.00395231319695858 0.842539956479439 0.0880742344239483 0.842528715447582 0.754465722055491 0.754454481023634 0.0623379840467781 1.18598785054918 1.32225792630317 0.0920691881463056 1.32223182187456 1.23018873815686 1.23016263372825 1.37581261909432 0.0764095517760612 0.999754748600533 0.00252958095458289 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards sigmoid" 3.04342230131477 0.0449382687527419 6.81625388888889 0.111344220886614 0.00053211483862603 0.0556626629934722 0.00387136841849492 0.807214512297039 0.00378851478092936 0.862877175290511 0.0817091172313295 0.862843943373837 0.781168058059181 0.781134826142507 0.0572409770684312 1.24165517922426 1.36996971193357 0.0851401153555837 1.36989095460621 1.28482959657798 1.28475083925063 1.25155544499941 0.0687282596513218 0.999773222693453 0.00254586287935126 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards sigmoid" 3.40984196234943 0.0273360225985238 7.17374972222222 0.104909950247054 0.000320509638786788 0.0670946887710371 0.00214797629965173 0.835221165477497 0.00207744941670489 0.902315854248534 0.0807525020643599 0.901946971348112 0.821563352184174 0.821194469283752 0.0693967332430874 1.30532384995973 1.46530579421431 0.0841025502173454 1.46439655277464 1.38120324399697 1.38029400255729 0.753286731439822 0.0336141517371988 0.999897955876558 0.00130605700907156 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards sigmoid" 2.43102440775711 0.0454605985590097 5.50543583333333 0.126842367574397 0.000788090696060512 0.0539690230506907 0.00446798137137374 0.690558562368951 0.00442509749533481 0.744527585419641 0.0857310638249255 0.74452755483612 0.658796521594716 0.658796491011195 0.0554519069684636 0.994829458783827 1.10544655635026 0.0895132793671187 1.10544649195829 1.01593327698314 1.01593321259117 1.86325174039779 0.111013983680208 0.999682108231503 0.00226178478453787 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards sigmoid" 2.48092971341753 0.0462358408909463 5.62460111111111 0.126022327995321 0.000766265198216623 0.0498912361992905 0.00451231731412719 0.714630509305857 0.00446315308100269 0.764521745505147 0.0803254380277494 0.764521612664574 0.684196307477398 0.684196174636825 0.0511567623538203 1.04343151382482 1.14796685416386 0.0836396678533904 1.14796656882673 1.06432718631047 1.06432690097334 1.6892416239556 0.102428344960951 0.999685472160361 0.00245503448373934 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards sigmoid" 2.42408640744135 0.0532786618803828 5.62460111111111 0.124384376977411 0.000823105161949976 0.0492950122622815 0.00516311815303983 0.727641420856731 0.00510226521814267 0.776936433119012 0.0803276492472531 0.776936116027565 0.696608783871759 0.696608466780311 0.0505302243276007 1.07019213302561 1.17479940590863 0.0836420640212081 1.17479871629844 1.09115734188742 1.09115665227723 1.58714593821028 0.108898701673299 0.999619231516236 0.00307919508939737 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards sigmoid" 2.3516083906569 0.0596596631244507 5.69610027777778 0.122918277329311 0.000825310524938601 0.0456238028839663 0.00577234400145717 0.757677923259936 0.00569718881396185 0.803301726143903 0.0794802281473059 0.803300765454603 0.723821497996597 0.723820537307297 0.0466805786671931 1.1333167393977 1.23290119927319 0.0827241518553661 1.23289905414994 1.15017704741783 1.15017490229457 1.50943196721409 0.109906089971898 0.999597425228284 0.00351671862436235 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards sigmoid" 2.5236010165651 0.0587446480551128 5.93443083333333 0.120073445181908 0.000783304897530514 0.0450247442396835 0.00549978744950499 0.786911440589629 0.00540921373997301 0.831936184829312 0.0732958505454819 0.831929765474958 0.75864033428383 0.758633914929476 0.0460537433930304 1.19660160399639 1.29776333060356 0.0760488394635108 1.29774858049386 1.22171449114005 1.22169974103035 1.2397630247936 0.0944772278955165 0.999601760903923 0.00394547420222901 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards sigmoid" 2.58690524730753 0.0503605394422555 6.17276138888889 0.109989495010269 0.000552298616707589 0.0475039668950725 0.00430649396880978 0.83068144919568 0.00419058755640174 0.878185416090752 0.0684271066193943 0.878046704871374 0.809758309471358 0.80961959825198 0.0486503609989841 1.2948820530738 1.40652889340594 0.0708225662291506 1.40619510399936 1.33570632717678 1.33537253777021 0.776030021315298 0.0590320987662605 0.999743045862095 0.00295407387389294 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards sigmoid" 2.17498330451382 0.0502798395951241 5.12410694444444 0.122218804779539 0.000784428545413071 0.0435682252869189 0.00476512105024793 0.699692212079932 0.00470444935542924 0.743260437366851 0.0678435113592805 0.743259718765618 0.67541692600757 0.675416207406337 0.0445312553256874 1.01313299408815 1.10278033345246 0.0701978215718182 1.10277882239246 1.03258251188064 1.03258100082064 1.18141837167591 0.0894530619922231 0.999633683586648 0.00265620405353138 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards sigmoid" 2.51277041358427 0.0385075634064252 5.50543583333333 0.124302687102611 0.000662579603795554 0.0363365047244458 0.00363658784524449 0.715682301787501 0.00358889800467861 0.752018806511947 0.0575296223014987 0.75201790943738 0.694489184210448 0.694488287135881 0.0370047447805615 1.04558191041505 1.12127814693769 0.0592166466248745 1.12127624399387 1.06206150031282 1.062059597369 1.22124196187785 0.0728117473772727 0.999746251949321 0.00205128571327075 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards sigmoid" 2.53563260737677 0.0376782240880802 5.60076805555555 0.122775490964049 0.000617718940237756 0.0383224027816064 0.00352849516406259 0.723989555808605 0.00348019897003327 0.762311958590212 0.0604113492179259 0.762310653602122 0.701900609372286 0.701899304384196 0.0390661767078291 1.06264585810741 1.14322554568591 0.0622734220263796 1.14322274880392 1.08095212365953 1.08094932677754 1.22916202573701 0.0694532756349596 0.999772141364762 0.00189783824442075 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "logistic sigmoid." 2.60565520411145 0.0279148207786424 5.67226722222222 0.122180167529517 0.000572646164016784 0.0367511554868138 0.00173132045208087 0.75510174924411 0.00189799830326426 0.791852904730924 0.0552120643649708 0.791846881057418 0.736640840365953 0.736634816692447 0.0374348287497246 1.12782801723342 1.20748289466742 0.0567646930486905 1.20746959755124 1.15071820161873 1.15070490450255 NA NA 0.999760229166242 0.00222986115644153 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "logistic sigmoid." 2.59552092034145 0.0233507552285751 5.7914325 0.12311239814861 0.000459924953718036 0.0376321525320693 0.00147723901592513 0.788206013379693 0.00162316638429969 0.825838165911762 0.0581595525832075 0.82582810286149 0.767678613328555 0.767668550278282 0.0383492084922821 1.19944710612095 1.28379416176132 0.0598840894646306 1.2837711799415 1.22391007229669 1.22388709047687 NA NA 0.999844012469462 0.00158372380662876 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards sigmoid" 2.65619332146438 0.0304232772610151 6.00593 0.113927548226674 0.000394015356154558 0.0448535113624544 0.00262903429411648 0.830698452896991 0.00255902360970839 0.875551964259445 0.0596126030160059 0.875406838654098 0.815939361243439 0.815794235638092 0.0458746399354508 1.29492107489454 1.4001997528856 0.0614252739377605 1.39985144771812 1.33877447894784 1.33842617378036 0.630436857242866 0.0359660377290858 0.999878122228538 0.0014247167012055 "I " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "richards sigmoid" 14.4916170457847 0.0217082069318843 18.6612825 0.0889624209370597 0.000433181631551599 0.00193467418446847 0.000448535101404725 0.976169168246482 0.0129778271847923 0.97810384243095 0.00193467418448112 0.752023542360525 0.976169168246469 0.750088868176044 0.00193654687405509 1.65426868422052 1.65940879994385 0.00193654687406775 1.12128819301358 1.65747225306978 1.11935164613951 0.07 0.0304918969768742 0.999799864971328 0.00156360720906969 "E*" "U" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA "E " "-" "-" "" "YPDAFEXglucoseTests_2-25-10_plots_2015-04-07_15.34.27.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
# Raw OD values are adjusted and log-transformed before fitting a growth curve as follows: log.OD = log(OD - blank + const) where blank is OD of blank medium and const is specified by the user (1 by default)
# Values are reported on the above 'log.OD' scale unless otherwise specified.
# .SE columns report standard errors of those values that are estimated directly as parameters of global sigmoid models.
# .OD columns report values back-transformed to the linear 'OD - blank' scale.
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - lag.time: Lag time estimate inferred from the fitted model
# - inflection.time: inflection time point of the growth curve when drawn on the log scale
# - max.spec.growth.rate: maximum specific growth rate estimate inferred from the fitted model. Estimated as the first derivative of the growth curve at inflection time point
# - baseline: growth curve baseline. Global sigmoid model: baseline is parameter 'b' of the model. LOESS: baseline is the same as the lowest predicted log.OD value
# - amplitude: difference between upper plateau and baseline values. Global sigmoid model: amplitude is parameter 'A' of the model. LOESS: amplitude = max.log.OD - min.log.OD
# - plateau: upper asymptote value of the fitted model. Global sigmoid model: plateau = b + A. LOESS: plateau = max.log.OD
# - inoc.log.OD: log.OD value at inoculation. Estimated value from the fitted model is used, rather than the actual measurement
# - max.log.OD: maximal log.OD value reached during the experiment. Estimated value from the fitted model is used rather than the actual measurement
# - projected.growth: maximal projected growth over inoculation value. Global sigmoid model: projected.growth = plateau - inoc.log.OD. LOESS: not reported
# - achieved.growth: maximal growth over inoculation value actually achieved during the experiment. achieved.growth = max.log.OD - inoc.log.OD
# - shape.par: shape parameter of the Richard equation
# - R.squared: goodness of fit metric. Also known as coefficient of determination. R.squared is usually between 0 and 1. A value close to 1 indicates good fit.
# - RSS: residual sum of squares. Another goodness of fit metric. Smaller values indicate better fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - asymp.not.reached: shows “L” if the bottom asymptote (baseline) was not reached and “U” if the upper asymptote (plateau) was not reached.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - other: Additional flag column. Displays information about whether jumps in OD were detected and what was done about them.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 5.0
# request sent: 2015-04-07 15:34:27
# completed: 2015-04-07 15:34:33
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: First timepoint in well
# - Index of inoculation timepoint 2
# - Minimum growth threshold: 0.05
# - Removed points:
# - Jump detection: FALSE
Rails/public/generatedFiles/20150407-1428438865/output_overview_2015-04-07_15.34.27.pdf
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Rails/public/generatedFiles/20150407-1428438865/singlePlateAnalysis.zip
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