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GCAT5.0 released

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Minh
2015-04-10 15:12:45 -05:00
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Testing/GCAT_Automated_Test_Script/GCAT3/Growth_Threshold.txt
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"row" "plate" "well" "media" "strain" "model" "spec.growth" "tot.growth" "lag.time" "inoc.OD" "good.fit" "empty" "asymp" "tank" "reach" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source"
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty"
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty"
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty"
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty"
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty"
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty"
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty"
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty"
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty"
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 11 "Control strain plate" "Sample" "USDA" ""
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 12 "Control strain plate" "Sample" "USDA" ""
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 13 "Control strain plate" "Sample" "USDA" ""
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 14 "Control strain plate" "Sample" "USDA" ""
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 15 "Control strain plate" "Sample" "USDA" ""
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 16 "Control strain plate" "Sample" "USDA" ""
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty"
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty"
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 19 "Control strain plate" "Sample" "USDA" ""
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 20 "Control strain plate" "Sample" "USDA" ""
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 21 "Control strain plate" "Sample" "USDA" ""
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 22 "Control strain plate" "Sample" "USDA" ""
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 23 "Control strain plate" "Sample" "USDA" ""
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 24 "Control strain plate" "Sample" "USDA" ""
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty"
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty"
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 27 "Control strain plate" "Sample" "Internal source" ""
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 28 "Control strain plate" "Sample" "Internal source" ""
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 29 "Control strain plate" "Sample" "Internal source" ""
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 30 "Control strain plate" "Sample" "Internal source" ""
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 31 "Control strain plate" "Sample" "Internal source" ""
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 32 "Control strain plate" "Sample" "Internal source" ""
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty"
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty"
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 35 "Control strain plate" "Sample" "ATCC" ""
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 36 "Control strain plate" "Sample" "ATCC" ""
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 37 "Control strain plate" "Sample" "ATCC" ""
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 38 "Control strain plate" "Sample" "ATCC" ""
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 39 "Control strain plate" "Sample" "ATCC" ""
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 40 "Control strain plate" "Sample" "ATCC" ""
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty"
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty"
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty"
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty"
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty"
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty"
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty"
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty"
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty"
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty"
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 51 "Control strain plate" "Sample" "USDA" ""
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 52 "Control strain plate" "Sample" "USDA" ""
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 53 "Control strain plate" "Sample" "USDA" ""
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 54 "Control strain plate" "Sample" "USDA" ""
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 55 "Control strain plate" "Sample" "USDA" ""
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 56 "Control strain plate" "Sample" "USDA" ""
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty"
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty"
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 59 "Control strain plate" "Sample" "USDA" ""
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 60 "Control strain plate" "Sample" "USDA" ""
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 61 "Control strain plate" "Sample" "USDA" ""
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 62 "Control strain plate" "Sample" "USDA" ""
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 63 "Control strain plate" "Sample" "USDA" ""
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards 5-par." 0.104909957772007 1.38120323294419 3.5400282340856 0.0841025860310471 3.54895808838236 "I " "-" "-" 99.9341701264792 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 64 "Control strain plate" "Sample" "USDA" ""
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty"
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty"
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 67 "Control strain plate" "Sample" "Internal source" ""
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 68 "Control strain plate" "Sample" "Internal source" ""
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 69 "Control strain plate" "Sample" "Internal source" ""
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 70 "Control strain plate" "Sample" "Internal source" ""
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 71 "Control strain plate" "Sample" "Internal source" ""
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 72 "Control strain plate" "Sample" "Internal source" ""
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty"
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty"
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 75 "Control strain plate" "Sample" "ATCC" ""
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 76 "Control strain plate" "Sample" "ATCC" ""
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 77 "Control strain plate" "Sample" "ATCC" ""
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 78 "Control strain plate" "Sample" "ATCC" ""
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 79 "Control strain plate" "Sample" "ATCC" ""
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "<NA>: skipped" NA NA NA NA NA "! " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 80 "Control strain plate" "Sample" "ATCC" ""
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty"
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty"
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty"
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty"
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty"
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty"
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty"
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty"
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty"
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty"
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty"
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty"
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty"
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty"
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty"
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty"
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_11.58.22.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty"
# -- Explanation of columns --
# - model: Name of the model the well was successfully fit with (if any)
# - spec.growth: (Specific growth rate) The largest exponential growth rate achieved by the culture in the course of the experiment
# - tot.growth: (Total extrapolated growth) The estimated growth plateau from the fitted model in optical density units. May be higher than the actual highest OD reached.
# - lag.time: (Lag time) The exponential trend from <spec.growth> is extrapolated to the baseline OD at inoculation and subtracted from the time at inoculation to yield lag time.
# - inoc.OD: (OD at inoculation) The adjusted optical density at the user-specified starting timepoint.
# - good.fit: (Goodness of fit) A metric based on root mean square deviations (RMSD).
# - higher values ( > 3.0) indicate a very good fit while lower values (< 2.0) indicate generally unacceptable fits.
# - empty: (Well indicator)
# - an 'E' indicates that the well was empty and no growth was detected.
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
# - an '!' indicates that the well was inoculated and no growth was detected.
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
# - reach: (Final growth percentage): The percentage of <tot.growth> reached by the culture in the course of the experiment.
# - other: Other information includes output from jump detection algorithm and additional columns from the Plate Layout.
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
#
# -- Source file information--
# YPDAFEXglucoseTests_2-25-10.csv
# analyzed using GCAT v 0.01
# request sent: 2013-11-26 11:58:22
# completed: 2013-11-26 11:58:30
#
# -- Parameters used in current analysis --
# - Constant added to log(OD + n) transformation: 1
# - Blank OD value: First timepoint in well
# - Index of inoculation timepoint 2
# - Minimum growth threshold: 1.37
# - Removed points:
# - Jump detection: FALSE