GCAT5.0 released
This commit is contained in:
Minh
+129
@@ -0,0 +1,129 @@
|
||||
"row" "plate" "well" "media" "strain" "model" "spec.growth" "tot.growth" "lag.time" "inoc.OD" "good.fit" "empty" "asymp" "tank" "reach" "other" "pdf.file" "page.no" "Destination.plate.name" "Well.ID" "Plate.source" "Well.Source" "Media.Definition"
|
||||
1 "YPDAFEXglucoseTests_2-25-10" "A01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 2 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
2 "YPDAFEXglucoseTests_2-25-10" "B01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 3 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
3 "YPDAFEXglucoseTests_2-25-10" "C01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 4 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
4 "YPDAFEXglucoseTests_2-25-10" "D01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 5 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
5 "YPDAFEXglucoseTests_2-25-10" "E01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 6 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
6 "YPDAFEXglucoseTests_2-25-10" "F01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 7 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
7 "YPDAFEXglucoseTests_2-25-10" "G01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 8 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
8 "YPDAFEXglucoseTests_2-25-10" "H01" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 9 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
9 "YPDAFEXglucoseTests_2-25-10" "A02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 10 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
10 "YPDAFEXglucoseTests_2-25-10" "B02" "YP" "Lab strain" "logistic 4-par." 0.00512322284611084 0.0885706705171092 0.00146885083119497 0.109882390197245 2.6703814889978 "I " "-" "-" 92.8305994745802 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 11 "Control strain plate" "Sample" "USDA" "" "YP"
|
||||
11 "YPDAFEXglucoseTests_2-25-10" "C02" "YP+0.25% glucose" "Lab strain" "richards 5-par." 0.0459063906963165 0.241063286623944 2.41105819151703 0.0760544501191693 2.33445949677366 "I " "-" "-" 99.9998616892386 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 12 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
|
||||
12 "YPDAFEXglucoseTests_2-25-10" "D02" "YP+0.5% glucose" "Lab strain" "richards 5-par." 0.0729653521516789 0.434572158524765 3.10530782875816 0.0912110779424646 2.66378208529322 "I " "-" "-" 99.99999403812 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 13 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
|
||||
13 "YPDAFEXglucoseTests_2-25-10" "E02" "YP+1% glucose" "Lab strain" "richards 5-par." 0.087549003744991 0.680384078190256 3.41500410591867 0.078602369429122 3.04253253857771 "I " "-" "-" 99.999783493135 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 14 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
|
||||
14 "YPDAFEXglucoseTests_2-25-10" "F02" "YP+2% glucose" "Lab strain" "logistic 4-par." 0.0835036622875622 0.849207863293472 2.94083431769237 0.0735497372002751 2.71606517889471 "I " "-" "-" 99.9920437081347 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 15 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
|
||||
15 "YPDAFEXglucoseTests_2-25-10" "G02" "YP+5% glucose" "Lab strain" "logistic 4-par." 0.0605784733145486 1.11352517731425 1.48539390611669 0.0496177952902848 1.88568659491702 "I " "L" "-" 98.9719626898602 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 16 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
|
||||
16 "YPDAFEXglucoseTests_2-25-10" "H02" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 17 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
17 "YPDAFEXglucoseTests_2-25-10" "A03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 18 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
18 "YPDAFEXglucoseTests_2-25-10" "B03" "YP" "Wild strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 19 "Control strain plate" "Sample" "USDA" "" "YP"
|
||||
19 "YPDAFEXglucoseTests_2-25-10" "C03" "YP+0.25% glucose" "Wild strain" "logistic 4-par." 0.0457475800711658 0.256904287297204 1.72691879921013 0.110606719040152 1.77859625443674 "I " "-" "-" 99.9999947777523 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 20 "Control strain plate" "Sample" "USDA" "" "YP+0.25% glucose"
|
||||
20 "YPDAFEXglucoseTests_2-25-10" "D03" "YP+0.5% glucose" "Wild strain" "logistic 4-par." 0.0944654373655411 0.426655260550642 2.75828968419929 0.12991755273642 2.52869451465839 "I " "-" "-" 99.9999999844561 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 21 "Control strain plate" "Sample" "USDA" "" "YP+0.5% glucose"
|
||||
21 "YPDAFEXglucoseTests_2-25-10" "E03" "YP+1% glucose" "Wild strain" "richards 5-par." 0.121095965736346 0.687037999671402 3.14313398289071 0.106191053770912 2.95478381597453 "I " "-" "-" 99.9999999793889 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 22 "Control strain plate" "Sample" "USDA" "" "YP+1% glucose"
|
||||
22 "YPDAFEXglucoseTests_2-25-10" "F03" "YP+2% glucose" "Wild strain" "richards 5-par." 0.129855086205514 1.04449449227513 2.93366816024193 0.121714484234362 2.81436465576683 "I " "-" "-" 99.9999891316078 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 23 "Control strain plate" "Sample" "USDA" "" "YP+2% glucose"
|
||||
23 "YPDAFEXglucoseTests_2-25-10" "G03" "YP+5% glucose" "Wild strain" "richards 5-par." 0.120898435937539 1.32764962491579 2.72323240077344 0.127905341227191 3.00797833267527 "I " "-" "-" 99.9912733187558 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 24 "Control strain plate" "Sample" "USDA" "" "YP+5% glucose"
|
||||
24 "YPDAFEXglucoseTests_2-25-10" "H03" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 25 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
25 "YPDAFEXglucoseTests_2-25-10" "A04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 26 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
26 "YPDAFEXglucoseTests_2-25-10" "B04" "YP" "Industrial strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 27 "Control strain plate" "Sample" "Internal source" "" "YP"
|
||||
27 "YPDAFEXglucoseTests_2-25-10" "C04" "YP+0.25% glucose" "Industrial strain" "logistic 4-par." 0.049113938942915 0.258748737037695 0.611171874481659 0.0845578831007956 1.61316239160049 "I " "-" "-" 99.9999962105762 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 28 "Control strain plate" "Sample" "Internal source" "" "YP+0.25% glucose"
|
||||
28 "YPDAFEXglucoseTests_2-25-10" "D04" "YP+0.5% glucose" "Industrial strain" "logistic 4-par." 0.093074527600122 0.412178246785743 1.71538098733957 0.0913303370508307 2.46532958224324 "I " "-" "-" 99.9999999905309 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 29 "Control strain plate" "Sample" "Internal source" "" "YP+0.5% glucose"
|
||||
29 "YPDAFEXglucoseTests_2-25-10" "E04" "YP+1% glucose" "Industrial strain" "richards 5-par." 0.124584782390426 0.665071528928034 2.16566832060573 0.09109869026466 3.26118827375832 "I " "-" "-" 99.9999999995832 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 30 "Control strain plate" "Sample" "Internal source" "" "YP+1% glucose"
|
||||
30 "YPDAFEXglucoseTests_2-25-10" "F04" "YP+2% glucose" "Industrial strain" "richards 5-par." 0.12792707646206 0.990201196030809 2.06107722840498 0.087648083744547 3.04010612494743 "I " "L" "-" 99.9999999791478 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 31 "Control strain plate" "Sample" "Internal source" "" "YP+2% glucose"
|
||||
31 "YPDAFEXglucoseTests_2-25-10" "G04" "YP+5% glucose" "Industrial strain" "richards 5-par." 0.115598093951232 1.30017594724392 1.86057928629408 0.0816316115810476 2.87659439741231 "I " "L" "-" 99.9999089635063 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 32 "Control strain plate" "Sample" "Internal source" "" "YP+5% glucose"
|
||||
32 "YPDAFEXglucoseTests_2-25-10" "H04" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 33 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
33 "YPDAFEXglucoseTests_2-25-10" "A05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 34 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
34 "YPDAFEXglucoseTests_2-25-10" "B05" "YP" "Engineered strain" "<NA>: failed" NA NA NA NA NA "I " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 35 "Control strain plate" "Sample" "ATCC" "" "YP"
|
||||
35 "YPDAFEXglucoseTests_2-25-10" "C05" "YP+0.25% glucose" "Engineered strain" "logistic 4-par." 0.0455423852277455 0.253011492887766 0.633612783422165 0.0599180880707215 1.44199308592877 "I " "-" "-" 99.9999836645589 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 36 "Control strain plate" "Sample" "ATCC" "" "YP+0.25% glucose"
|
||||
36 "YPDAFEXglucoseTests_2-25-10" "D05" "YP+0.5% glucose" "Engineered strain" "richards 5-par." 0.0942560771156105 0.47165366043215 1.87947890043788 0.0641152719303668 2.32215880898724 "I " "-" "-" 99.9999936292908 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 37 "Control strain plate" "Sample" "ATCC" "" "YP+0.5% glucose"
|
||||
37 "YPDAFEXglucoseTests_2-25-10" "E05" "YP+1% glucose" "Engineered strain" "richards 5-par." 0.121404566371326 0.711085043803959 2.08707581462709 0.079800634332521 2.77857179654498 "I " "-" "-" 99.9999975813868 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 38 "Control strain plate" "Sample" "ATCC" "" "YP+1% glucose"
|
||||
38 "YPDAFEXglucoseTests_2-25-10" "F05" "YP+2% glucose" "Engineered strain" "richards 5-par." 0.12865948433987 0.98597671409577 2.03868589008582 0.087495143007229 2.98217250669466 "I " "-" "-" 99.9999873691302 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 39 "Control strain plate" "Sample" "ATCC" "" "YP+2% glucose"
|
||||
39 "YPDAFEXglucoseTests_2-25-10" "G05" "YP+5% glucose" "Engineered strain" "richards 5-par." 0.122711103907082 1.31562500185075 2.01371509312624 0.0697603778582843 3.07643306357741 "I " "L" "-" 99.999598061796 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 40 "Control strain plate" "Sample" "ATCC" "" "YP+5% glucose"
|
||||
40 "YPDAFEXglucoseTests_2-25-10" "H05" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 41 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
41 "YPDAFEXglucoseTests_2-25-10" "A06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 42 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
42 "YPDAFEXglucoseTests_2-25-10" "B06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 43 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
43 "YPDAFEXglucoseTests_2-25-10" "C06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 44 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
|
||||
44 "YPDAFEXglucoseTests_2-25-10" "D06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 45 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
|
||||
45 "YPDAFEXglucoseTests_2-25-10" "E06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 46 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
|
||||
46 "YPDAFEXglucoseTests_2-25-10" "F06" "Empty" "Empty" "richards 5-par." 0.0857882390552096 1.24493866823306 9.88179192729724 -0.0165597461168613 2.32606464578444 "E*" "L" "-" 98.4210828771573 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 47 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
|
||||
47 "YPDAFEXglucoseTests_2-25-10" "G06" "Empty" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 48 "Control strain plate" "Empty" "Empty" "Empty" "Empty"
|
||||
48 "YPDAFEXglucoseTests_2-25-10" "H06" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 49 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
49 "YPDAFEXglucoseTests_2-25-10" "A07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 50 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
50 "YPDAFEXglucoseTests_2-25-10" "B07" "AFEX" "Lab strain" "richards 5-par." 0.0910656809877224 0.978831696720056 3.88851123944356 0.057119562600749 3.50838381966352 "I " "-" "-" 99.9960539072354 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 51 "Control strain plate" "Sample" "USDA" "" "AFEX"
|
||||
51 "YPDAFEXglucoseTests_2-25-10" "C07" "AFEX+0.25% glucose" "Lab strain" "richards 5-par." 0.0897750856169793 1.02459532986805 3.8967929087061 0.0551818328016911 3.46998372922229 "I " "-" "-" 99.991259133915 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 52 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
|
||||
52 "YPDAFEXglucoseTests_2-25-10" "D07" "AFEX+0.5% glucose" "Lab strain" "richards 5-par." 0.087292525747305 1.0527501330422 4.21907836932876 0.0490476413563776 3.51721701779359 "I " "-" "-" 99.9856386878846 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 53 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
|
||||
53 "YPDAFEXglucoseTests_2-25-10" "E07" "AFEX+1% glucose" "Lab strain" "richards 5-par." 0.0854275766875656 1.09681106370395 4.42403082220079 0.0527978561023557 3.39981186901509 "I " "-" "-" 99.9660125813752 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 54 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
|
||||
54 "YPDAFEXglucoseTests_2-25-10" "F07" "AFEX+2% glucose" "Lab strain" "richards 5-par." 0.084278824827003 1.16188034043041 4.37444626455929 0.0484042275684464 3.40906624822256 "I " "-" "-" 99.9039249274661 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 55 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
|
||||
55 "YPDAFEXglucoseTests_2-25-10" "G07" "AFEX+5% glucose" "Lab strain" "richards 5-par." 0.0751490389653923 1.29671192755065 4.45016704465737 0.0546480394626687 3.48603212189912 "I " "-" "-" 98.5357819689647 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 56 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
|
||||
56 "YPDAFEXglucoseTests_2-25-10" "H07" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 57 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
57 "YPDAFEXglucoseTests_2-25-10" "A08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 58 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
58 "YPDAFEXglucoseTests_2-25-10" "B08" "AFEX" "Wild strain" "richards 5-par." 0.114233577227138 1.11940666165336 2.95659685349929 0.10276070095978 3.12523138568832 "I " "-" "-" 99.9998425058726 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 59 "Control strain plate" "Sample" "USDA" "" "AFEX"
|
||||
59 "YPDAFEXglucoseTests_2-25-10" "C08" "AFEX+0.25% glucose" "Wild strain" "richards 5-par." 0.114190896575847 1.14811138681943 3.18991017237117 0.0873694909800864 3.19174147527227 "I " "-" "-" 99.9996684768339 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 60 "Control strain plate" "Sample" "USDA" "" "AFEX+0.25% glucose"
|
||||
60 "YPDAFEXglucoseTests_2-25-10" "D08" "AFEX+0.5% glucose" "Wild strain" "richards 5-par." 0.113518812542465 1.18182740070708 3.15106253292283 0.0826636113465304 3.26600840866822 "I " "-" "-" 99.9993405132836 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 61 "Control strain plate" "Sample" "USDA" "" "AFEX+0.5% glucose"
|
||||
61 "YPDAFEXglucoseTests_2-25-10" "E08" "AFEX+1% glucose" "Wild strain" "richards 5-par." 0.112731557723291 1.23243667600584 3.12290823666719 0.0883532618105942 3.27099839140732 "I " "-" "-" 99.998177929312 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 62 "Control strain plate" "Sample" "USDA" "" "AFEX+1% glucose"
|
||||
62 "YPDAFEXglucoseTests_2-25-10" "F08" "AFEX+2% glucose" "Wild strain" "richards 5-par." 0.110711220465384 1.28465314801447 3.24291094200068 0.0838703449391198 3.34935047015509 "I " "-" "-" 99.9932361128704 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 63 "Control strain plate" "Sample" "USDA" "" "AFEX+2% glucose"
|
||||
63 "YPDAFEXglucoseTests_2-25-10" "G08" "AFEX+5% glucose" "Wild strain" "richards 5-par." 0.104911901010651 1.38112995826321 3.54007980934916 0.0841275019173986 3.60183900056643 "I " "-" "-" 99.9340428851054 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 64 "Control strain plate" "Sample" "USDA" "" "AFEX+5% glucose"
|
||||
64 "YPDAFEXglucoseTests_2-25-10" "H08" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 65 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
65 "YPDAFEXglucoseTests_2-25-10" "A09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 66 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
66 "YPDAFEXglucoseTests_2-25-10" "B09" "AFEX" "Industrial strain" "richards 5-par." 0.124639558557251 1.02518255796904 2.57760580712995 0.0790861200979034 3.25359624987887 "I " "-" "-" 99.9999985380202 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 67 "Control strain plate" "Sample" "Internal source" "" "AFEX"
|
||||
67 "YPDAFEXglucoseTests_2-25-10" "C09" "AFEX+0.25% glucose" "Industrial strain" "richards 5-par." 0.123259617514217 1.07597966901492 2.58617748296761 0.0704118282374251 3.3564765167362 "I " "-" "-" 99.9999945229239 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 68 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.25% glucose"
|
||||
68 "YPDAFEXglucoseTests_2-25-10" "D09" "AFEX+0.5% glucose" "Industrial strain" "richards 5-par." 0.120921387314129 1.1054141886015 2.49733136040803 0.0672610858991924 3.35561723828862 "I " "L" "-" 99.999989789286 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 69 "Control strain plate" "Sample" "Internal source" "" "AFEX+0.5% glucose"
|
||||
69 "YPDAFEXglucoseTests_2-25-10" "E09" "AFEX+1% glucose" "Industrial strain" "richards 5-par." 0.119469215205307 1.16386920095508 2.44599900455348 0.0666632835088954 3.26495706766016 "I " "L" "-" 99.9999598857272 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 70 "Control strain plate" "Sample" "Internal source" "" "AFEX+1% glucose"
|
||||
70 "YPDAFEXglucoseTests_2-25-10" "F09" "AFEX+2% glucose" "Industrial strain" "richards 5-par." 0.117055956532607 1.23292877894923 2.58733736534061 0.0615930499531776 3.23191783299634 "I " "-" "-" 99.9995312927806 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 71 "Control strain plate" "Sample" "Internal source" "" "AFEX+2% glucose"
|
||||
71 "YPDAFEXglucoseTests_2-25-10" "G09" "AFEX+5% glucose" "Industrial strain" "richards 5-par." 0.108245104945905 1.34096953377871 2.65843365395388 0.062727700859311 3.38843037787812 "I " "-" "-" 99.9788375045276 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 72 "Control strain plate" "Sample" "Internal source" "" "AFEX+5% glucose"
|
||||
72 "YPDAFEXglucoseTests_2-25-10" "H09" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 73 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
73 "YPDAFEXglucoseTests_2-25-10" "A10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 74 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
74 "YPDAFEXglucoseTests_2-25-10" "B10" "AFEX" "Engineered strain" "richards 5-par." 0.121764774087552 1.03575182594995 2.35350455581128 0.0683841865814427 3.10711688897198 "I " "-" "-" 99.9998704011685 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 75 "Control strain plate" "Sample" "ATCC" "" "AFEX"
|
||||
75 "YPDAFEXglucoseTests_2-25-10" "C10" "AFEX+0.25% glucose" "Engineered strain" "richards 5-par." 0.123090824730516 1.06842524515535 2.62256716415931 0.0532958289475007 3.29457027142756 "I " "-" "-" 99.9998916790283 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 76 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.25% glucose"
|
||||
76 "YPDAFEXglucoseTests_2-25-10" "D10" "AFEX+0.5% glucose" "Engineered strain" "richards 5-par." 0.120944684388312 1.09008552670784 2.61886063345403 0.0530365880953372 3.43451356445556 "I " "-" "-" 99.9998823965125 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 77 "Control strain plate" "Sample" "ATCC" "" "AFEX+0.5% glucose"
|
||||
77 "YPDAFEXglucoseTests_2-25-10" "E10" "AFEX+1% glucose" "Engineered strain" "richards 5-par." 0.120734107580927 1.15670253081866 2.69611302714549 0.0488445587231696 3.43432940804069 "I " "-" "-" 99.999618979496 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 78 "Control strain plate" "Sample" "ATCC" "" "AFEX+1% glucose"
|
||||
78 "YPDAFEXglucoseTests_2-25-10" "F10" "AFEX+2% glucose" "Engineered strain" "richards 5-par." 0.121797460706957 1.22927410593987 2.69529695023975 0.0531367705332191 3.52592526978957 "I " "-" "-" 99.998902414812 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 79 "Control strain plate" "Sample" "ATCC" "" "AFEX+2% glucose"
|
||||
79 "YPDAFEXglucoseTests_2-25-10" "G10" "AFEX+5% glucose" "Engineered strain" "richards 5-par." 0.1128494281004 1.3421800558205 2.71555080399082 0.0562414213905349 3.66293619120109 "I " "-" "-" 99.9765721559617 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 80 "Control strain plate" "Sample" "ATCC" "" "AFEX+5% glucose"
|
||||
80 "YPDAFEXglucoseTests_2-25-10" "H10" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 81 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
81 "YPDAFEXglucoseTests_2-25-10" "A11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 82 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
82 "YPDAFEXglucoseTests_2-25-10" "B11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 83 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
83 "YPDAFEXglucoseTests_2-25-10" "C11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 84 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
84 "YPDAFEXglucoseTests_2-25-10" "D11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 85 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
85 "YPDAFEXglucoseTests_2-25-10" "E11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 86 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
86 "YPDAFEXglucoseTests_2-25-10" "F11" "None" "Empty" "logistic 4-par." 0.0955422988477089 1.27434659362621 14.7977758044825 -0.00282569557385737 2.58074649545863 "E*" "L/U" "-" 85.8739348760869 "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 87 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
87 "YPDAFEXglucoseTests_2-25-10" "G11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 88 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
88 "YPDAFEXglucoseTests_2-25-10" "H11" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 89 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
89 "YPDAFEXglucoseTests_2-25-10" "A12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 90 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
90 "YPDAFEXglucoseTests_2-25-10" "B12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 91 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
91 "YPDAFEXglucoseTests_2-25-10" "C12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 92 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
92 "YPDAFEXglucoseTests_2-25-10" "D12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 93 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
93 "YPDAFEXglucoseTests_2-25-10" "E12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 94 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
94 "YPDAFEXglucoseTests_2-25-10" "F12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 95 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
95 "YPDAFEXglucoseTests_2-25-10" "G12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 96 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
96 "YPDAFEXglucoseTests_2-25-10" "H12" "None" "Empty" "<NA>: skipped" NA NA NA NA NA "E " "-" "-" NA "" "YPDAFEXglucoseTests_2-25-10_plots_2013-11-26_12.08.40.pdf" 97 "Control strain plate" "Empty" "Empty" "Empty" "None"
|
||||
|
||||
# -- Explanation of columns --
|
||||
# - model: Name of the model the well was successfully fit with (if any)
|
||||
# - spec.growth: (Specific growth rate) The largest exponential growth rate achieved by the culture in the course of the experiment
|
||||
# - tot.growth: (Total extrapolated growth) The estimated growth plateau from the fitted model in optical density units. May be higher than the actual highest OD reached.
|
||||
# - lag.time: (Lag time) The exponential trend from <spec.growth> is extrapolated to the baseline OD at inoculation and subtracted from the time at inoculation to yield lag time.
|
||||
# - inoc.OD: (OD at inoculation) The adjusted optical density at the user-specified starting timepoint.
|
||||
# - good.fit: (Goodness of fit) A metric based on root mean square deviations (RMSD).
|
||||
# - higher values ( > 3.0) indicate a very good fit while lower values (< 2.0) indicate generally unacceptable fits.
|
||||
# - empty: (Well indicator)
|
||||
# - an 'E' indicates that the well was empty and no growth was detected.
|
||||
# - an 'I' indicates that the well was inoculated and growth was detected above the threshold.
|
||||
# - an 'E*' indicates that the well was empty and growth was detected (possible contamination).
|
||||
# - an '!' indicates that the well was inoculated and no growth was detected.
|
||||
# - tank: (Tanking indicator) If a number is present then the growth trend was determined to tank at that timepoint index.
|
||||
# - reach: (Final growth percentage): The percentage of <tot.growth> reached by the culture in the course of the experiment.
|
||||
# - other: Other information includes output from jump detection algorithm and additional columns from the Plate Layout.
|
||||
# - pdf.file and page.no: location of the figure for this well in the output .pdf files.
|
||||
#
|
||||
# -- Source file information--
|
||||
# YPDAFEXglucoseTests_2-25-10.csv
|
||||
# analyzed using GCAT v 0.01
|
||||
# request sent: 2013-11-26 12:08:40
|
||||
# completed: 2013-11-26 12:08:55
|
||||
#
|
||||
# -- Parameters used in current analysis --
|
||||
# - Constant added to log(OD + n) transformation: 1
|
||||
# - Blank OD value: First timepoint in well
|
||||
# - Index of inoculation timepoint 2
|
||||
# - Minimum growth threshold: 0.05
|
||||
# - Removed points: 70 71 72 73 74 75 76 77 78 79
|
||||
# - Jump detection: FALSE
|
||||
Reference in New Issue
Block a user